BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06110.1 Length=2479 Score E Sequences producing significant alignments: (Bits) Value Ahg940041 jgi|Araly1|940041|scaffold_600585.1 1134 0.0 Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 918 0.0 > Ahg940041 jgi|Araly1|940041|scaffold_600585.1 Length=1746 Score = 1134 bits (614), Expect = 0.0 Identities = 738/796 (93%), Gaps = 15/796 (2%) Strand=Plus/Plus Query 1294 CAGCTATTgaagaagagaaaaggcgaaaagaagaagaagCAAAACGTGCGGCAGAGGCTG 1353 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 691 CAGCTATTGAAGAAGAGAAAAGGCGGAAAGAAGAAGAAGCAAAACGTGCAGCAGAGGCTG 750 Query 1354 CTCAGCTGCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTC 1413 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 751 CTCTGCTGCACAAGAGAGCCAAGGAAAAAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTA 810 Query 1414 GGCTCAGAGTTCTCTCCGCCCCTGTTCTGTCCCAGCGTCTGCTTGGCATATCTGATGAAC 1473 |||||||| |||| ||||| |||||||||||||||||||||||| |||| |||||||||| Sbjct 811 GGCTCAGAATTCTATCCGCACCTGTTCTGTCCCAGCGTCTGCTTAGCATCTCTGATGAAC 870 Query 1474 ATGTGGAAGATCTATGCATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 1533 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 871 ATGTGGAAGATCTATGTATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 930 Query 1534 TGGAAAACAAGGAAGGGA-TGGCTTTGGCAAAGGTGATCAAGAATGGGAGCAACATTGAT 1592 |||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||| Sbjct 931 TGGAAAACAAGGAA-GGACTGGCTTTGGCAAAGGTGATCAAGAATGGGAACAGCATTGAT 989 Query 1593 GATGAT-A--AAATAGAGATTGAAGAAGAAG-AAGTTCAAGTAGCTGTT-AAGCAGAATG 1647 |||||| | ||||||||||| |||||| || ||| ||| || ||| ||| || | Sbjct 990 GATGATGATGAAATAGAGATTAAAGAAG-AGAAAGAAGAAGAAGAAGTTCAAGTAG-CT- 1046 Query 1648 GTCATATAGAAGCCAATGGTCATGTAGAAGCCAATGGTCATGTAGAAGCCAAAGTGGATA 1707 || || || || ||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1047 GT--TA-AGCAG--AATGGTCATATAGAAGCCAATGGTCATGTAGAAGCCAAAGTAGATA 1101 Query 1708 CTGCTACTCATGAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1767 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 CTGCTACTCATCAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1161 Query 1768 AAGGAACAACCAAGTTCCCAAAAGGAACATCTCAGAGATGGGAAGTCATATCAGAGTACA 1827 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1162 AAGGAACAACTAAGTTCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACA 1221 Query 1828 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACTAAAACAGTACTTCTCCAGA 1887 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1222 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGA 1281 Query 1888 AACCCGACTCAGCTAAAGCTTTTGACTCTTTTCTGGAGAATAGGAAACCTGCCGCTTCAA 1947 |||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 1282 AACCTGACTCAGCTAAAGCATTTGATTCTTTTCTGGAGAAGAGGAAACCTGCTGCTTCAA 1341 Query 1948 TCAACTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGACCAAAGCTC 2007 || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1342 TCGCCTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGATCAAACCTC 1401 Query 2008 ATGAAGACAACAACTCAACCAAAACAGAGACCGCAGAACAGAACGGTAAGACCAAAGAGA 2067 ||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct 1402 ATGAAGAAAACAACTCAGCCAAAACAGAGACCGCAGAACAGAACGGTAAGAGCGAAGAGA 1461 Query 2068 ACAACAACAGTAACGG 2083 |||||||||| ||||| Sbjct 1462 ACAACAACAGCAACGG 1477 Score = 1099 bits (595), Expect = 0.0 Identities = 658/689 (96%), Gaps = 2/689 (0%) Strand=Plus/Plus Query 289 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 60 Query 349 CATACTCCAGTGAGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 408 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGTACTCCAGTGAGCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 120 Query 409 TGAAGGCTTTAAACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 468 | ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 TTAAGGCCGTAAACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 180 Query 469 GTGGTTGTGCTAAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTAAGG 528 |||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 181 GTGGGTGTACAAAGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGG 240 Query 529 AGAAGGATGGTGAATATATTCCTTCCTATGACTCCCATAACATCAAAGGAAAGAAGAAGT 588 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 AGAAGGATAGTGAATATATTCCTTCCTATGACTCGCATAACATCAAAGGAAAGAAGAAGT 300 Query 589 CGGGGAAGCTACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 648 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGGGAAGCAACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 360 Query 649 CAACAGATGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATA 708 ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 361 CAACAGAGGATCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATA 420 Query 709 AACTGGCTACTCTACTTCTT-CTTGAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGAT 767 |||| ||||||||||||||| || || |||||||||||||||||||||||||| |||||| Sbjct 421 AACTTGCTACTCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGAT 479 Query 768 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACA 827 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| Sbjct 480 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACA 539 Query 828 AAAAGAAGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 887 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 540 AAAAGAAGAATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 599 Query 888 CCCCAAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCAAAT 947 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 600 CCGCAAGACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTCGAAT 659 Query 948 TCGCCTTTACCAGATTTGGGAGATGAAAA 976 ||||||||||||||||||||||||||||| Sbjct 660 TCGCCTTTACCAGATTTGGGAGATGAAAA 688 Score = 390 bits (211), Expect = 2e-107 Identities = 258/280 (92%), Gaps = 5/280 (2%) Strand=Plus/Plus Query 2044 AACAG-AACGGTAAGACCAAAGAGAACAACAACAGTAACGGCAACTCTGAACCAGCA-GC 2101 ||||| |||||||||| | |||||||||||||||| || |||| ||||||||||| | | Sbjct 1467 AACAGCAACGGTAAGAGCGAAGAGAACAACAACAGCAATGGCATCTCTGAACCAG-ATAC 1525 Query 2102 AGCAT-CTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCTCTGGTACAGG 2160 || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1526 TGC-TGCTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCACTGGTACAGG 1584 Query 2161 CTTTGAAGACGTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 2220 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1585 CTTTGAAGACCTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 1644 Query 2221 CAGGGAAAACGATGAATCAATGCAAGAAGAAGTTTGCTGATCTTAAGGACGTCATCAGAA 2280 ||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1645 CAGGGAAAACGTTGAACCAATGCAAGAAGAAGTTTGCTGAGCTTAAGGACATCATCAGAA 1704 Query 2281 CCAAGAAACCCACAGCCTAACCTATCCGATTCCTCGAGCT 2320 ||||||||||||||||||||| |||| || ||||||||| Sbjct 1705 CCAAGAAACCCACAGCCTAACTTATCAGAGCCCTCGAGCT 1744 > Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 Length=2072 Score = 918 bits (497), Expect = 0.0 Identities = 1000/1238 (81%), Gaps = 54/1238 (4%) Strand=Plus/Plus Query 303 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGC-TACTTACATACTC-CAGTG 360 |||||||||| ||| || ||| | | ||| | |||||| || |||||||||| || | Sbjct 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTA-TTACATACTCTGAG-G 58 Query 361 AGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTGAAGGCTTTAA 420 ||||| |||||||| || || ||| ||||| ||||||||||| ||||||||||||||||| Sbjct 59 AGCTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAA 118 Query 421 ACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGTTGTGCT- 479 ||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||||| Sbjct 119 ACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAG 178 Query 480 AAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTA-AGGAGAA-G-GAT 536 ||| || ||||| | | || |||| | |||||||| || | | || || | || Sbjct 179 AAG-AACCCACA-G-ACGAT-GAAGGTGGTGATAAGAAAGTGGG-AGATGATAAAGAGAA 233 Query 537 GGTGAATATATTCCTTCCTATGA-CTCCCATAACATCAAAGGAAAGAAGAAGTCGGGGAA 595 || ||||| ||||||| | | | ||| || || ||||||||| |||||||| || | Sbjct 234 GG--AATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTAC 290 Query 596 GCTA-CAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAG 654 | | ||||| || |||||||| |||||||||||| ||||||||||||||||||| |||| Sbjct 291 CC-AGCAACAAGACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAG 349 Query 655 ATGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATAAACTGG 714 | |||||||| || ||||| ||||| || ||||| ||||||||||| ||||||||||| | Sbjct 350 AAGATCAGATTAGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCG 409 Query 715 CTACTCTACTTCTT-CTTGAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGATGAGATA 773 ||||||| ||||| | ||||| ||||||||||| || | || ||||| ||||||||| Sbjct 410 CTACTCTCCTTCTCGCA-GAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATA 468 Query 774 GAATCTCACTTCAA-GTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACAAAAAG 832 ||||||| |||||| | |||||||||||| |||||| | ||||||||| |||||| || Sbjct 469 GAATCTCGCTTCAAAGC-GATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAG 527 Query 833 AAGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCC 890 |||||| |||||||| || ||||||||||||||| | || ||| | ||||| | || | | Sbjct 528 AAGAATTTTTGACTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGC-CGC 586 Query 891 CAAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCA---AAT 947 ||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||| ||| Sbjct 587 -AAGACTTTTTCAAGGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAAT 645 Query 948 TC-GCCT-TTACCAGATTTGGGAGATGAAAATACACCACTTAAAGAGGTTGATAGGTTCT 1005 | || | || |||||||||||||||||||| ||| |||||||||| ||||||| ||||| Sbjct 646 -CAGCGTATT-CCAGATTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCT 703 Query 1006 ACAGTACTT--GGTACACTTTTAAAAGCTGGAGAGAGTTTCCTGAAGAAGAGGAGCATGA 1063 ||| |||| ||||| |||| || || ||||| || |||||||| |||||||||||||| Sbjct 704 ACA--ACTTTTGGTACGCTTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGA 761 Query 1064 TATCGAGCAAGCTGAATCCCGCGAGGAAAAGAGGTGGATGGAGAGAG-AGAATGCAAGAA 1122 | | || ||||| || ||||| || ||| |||||||||||||| || ||||||||| || Sbjct 762 TCTTGAACAAGCAGATTCCCGTGAAGAACGGAGGTGGATGGAGA-AGGAGAATGCAAAAA 820 Query 1123 AAACTCAGAAGGCTAGAAAGGAGGAATATGCTCGGATTAGGACTCTTGTGGACAACGCAT 1182 ||||| |||||||||||||||||| ||||||| || |||||||||| ||||| || | Sbjct 821 AAACTGTGAAGGCTAGAAAGGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGT 880 Query 1183 ATaaaaaagacataagaatacagaaaagaaaggatgacgaaaaggctaagaagctgcaga 1242 ||| ||||||| || || ||||||||| || || ||||||||| |||||| |||| Sbjct 881 ATAGAAAAGACCCGAGGATTGTGAAAAGAAAAGAGGAAGAAAAGGCTGAGAAGCAACAGA 940 Query 1243 agaaagaagcaaaag-TTATGGCCAAGAGGCAGCAGGAAGAAG-CTGCTGCTGCAGCTAT 1300 | ||||||||||| | || ||||||||| | |||||| ||| | | |||||| ||| Sbjct 941 AAAAAGAAGCAAA-GCTTCTGGCCAAGAAGAAGCAGGCAGAGGAC-GCTGCTATTGCTGC 998 Query 1301 TgaagaagagaaaaggcgaaaagaagaagaagCAAAA-CGTGCGGCAGAGGCTGCTCAGC 1359 |||||||||||||||||||||||||||||||| |||| || || ||||| |||| || | Sbjct 999 TGAAGAAGAGAAAAGGCGAAAAGAAGAAGAAG-AAAAGCGAGCAGCAGAATCTGCACAAC 1057 Query 1360 TGCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTG-CGCAAAGAACG-AAGTCGGCT 1417 || |||| | | ||||||| |||||||||||| || ||||||||||| || ||| || Sbjct 1058 AACAAAAGAAAACTAAGGAAAAAGAGAAGAAGCT-CTTACGCAAAGAACGGAA-TCGTCT 1115 Query 1418 CAGAGTTCTCTCCGCCCCTGTTC-TGTCCCAGCGTCTGCTTGGCATATCTGATGAACATG 1476 ||| |||||| || ||| | | || | ||||||||||||||||| || || ||| || Sbjct 1116 TAGAACTCTCTCAGCTCCTCT-CGTGGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATA 1174 Query 1477 TGGAAGA-TCTATGCATGTCACTTAACACCGAGCAGTT 1513 | || || ||||||||||||||| |||||||||||||| Sbjct 1175 TAGA-GAATCTATGCATGTCACTAAACACCGAGCAGTT 1211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93435370985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5