BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06150.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487418 jgi|Araly1|487418|fgenesh2_kg.6__552__AT5G06150.1 2495 0.0
> Ahg487418 jgi|Araly1|487418|fgenesh2_kg.6__552__AT5G06150.1
Length=1593
Score = 2495 bits (1351), Expect = 0.0
Identities = 1519/1600 (95%), Gaps = 11/1600 (1%)
Strand=Plus/Plus
Query 3 AATCGCAGAGACTCTTTACGAAAGAGAAATATCAAGACTAAGAAACAAGAAGAGTAAGAA 62
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AATCTCAGAGGCTCTTTACGAAAGAGAAAAATCAAGACTAAGAAACAAGAAGAGTAAGAA 60
Query 63 TCATTGGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 122
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGTAGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 120
Query 123 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAGTCGGCGTGCCC 182
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCGC 180
Query 183 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTC 242
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAACCTCAACCTC 240
Query 243 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCGAATGCCCAACTCG 302
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCCAATGCCCAACTCG 300
Query 303 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGACAACCTC 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCGGCTCTTGGTCCAAAGAGACAACCTC 360
Query 363 TTGCTGCAAGAAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATC-TAGTGGTTAAG 421
||||| ||||||||||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct 361 TTGCTACAAGAAACCCAGAAGCTCAAAAGGCGGTTCAGAAGA-GAAACCTAGTGGTTAAG 419
Query 422 CAACAGACGAAGCCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAAGTA 481
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CAACCGACCAAACCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAACTA 479
Query 482 GCGATGTCACCTAAGAATAAGAAAGTGACGTACTCGTCTGTACTTAGTGCTCGGAGCAAA 541
|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 GCAATGTCACCTAAGGATAAGAAAGTGACGTACTCGTCTGTTCTTAGTGCTCGGAGCAAA 539
Query 542 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTATCGATATTGATGAATCTGACAAAGAT 601
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 540 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGAATCTGACAAAGAT 599
Query 602 AACCATTTGGCTGCGGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 661
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AACCATCTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 659
Query 662 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAGACTGAAATGAATGAGAAGATGAGA 721
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 660 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAATGAGAAGATGAGA 719
Query 722 GCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTCAACCTTGAAACT 781
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 720 GCGATTTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTTAACCTGGAAACT 779
Query 782 CTGTACCTCACCGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCTAAAAGA 841
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 780 CTCTACCTCACTGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCCAAGAGA 839
Query 842 GAGTTACAGCTAGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATCTGG 901
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 GAGTTGCAGCTTGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATTTGG 899
Query 902 CCACCTCAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATT 961
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 900 CCACCTCAGGTTAACGATTTGGTGTATGTCACGGACAATGCTTACAACAGCAGACAGATA 959
Query 962 CTGGTGATGGAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1021
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTAGTGATGGAGAAGACTATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1019
Query 1022 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATGTCTGATCCAGAAATGGAGAATATG 1081
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1020 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATTTCTGACCCTGAAATGGAGAATATG 1079
Query 1082 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACACCTTGACGTTCTGTCCCTCC 1141
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1080 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACGCCTTGATGTTCTGTCCCTCC 1139
Query 1142 ATGCTTGCTGCTTCAGCTGTTTACACGGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1201
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 ATGCTTGCTGCTTCAGCTGTTTACACTGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1199
Query 1202 ACTGATACATTGCAGTTCCACACCGGCTACACAGAGTCTGAGATTATGGACTGCTCAAAG 1261
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1200 ACTGATACATTGCAGTTCCACACTGGCTACACAGAATCTGAGATTATGGACTGCTCGAAG 1259
Query 1262 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1319
Query 1322 TACTCGAAGGCAGAGAATGGAGGTGTTGCTATGGTTTCTCCGGCCAAGTCTCTCTTGAGT 1381
||||| ||||| |||||||||||||||||| ||||||| || |||||||| |||||||||
Sbjct 1320 TACTCAAAGGCTGAGAATGGAGGTGTTGCTTTGGTTTCACCAGCCAAGTCCCTCTTGAGT 1379
Query 1382 GCTGCTGCTGATTGGAAGAAGCCTGTTTCTTCTTAGATGttttttttCATCAGATCTCTC 1441
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCTGCTGCTGATTGGAAGAAGCCCGTTTCTTCTTAGATGTTTTTTTTCATCAGATCTCTC 1439
Query 1442 TCTGATTCAAAATTCTAGATTTCTCATC--AGA-TACTCTTTTGtttttttGAGTTCAAA 1498
|||||||||||||||||||||| ||| | | |||||||||||||| |||||||||
Sbjct 1440 TCTGATTCAAAATTCTAGATTTGACATGTTAAAATACTCTTTTGTTTT---GAGTTCAAA 1496
Query 1499 CGTATTAATGAATTCTTCTCATCAGTGTTTTTCTTAATCTCTGATTACTTGGATATTAGA 1558
||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1497 CGTATTAATGAATTCTT---ATCAGTGTTTTTCTTAGTCTCTGATTACTTTGATTTTAGT 1553
Query 1559 TTTCTACTATATCTTTAACAGATAGATGATGTTTGACTGT 1598
|||||||| ||||||||||||||||||||||||||| |||
Sbjct 1554 TTTCTACTGTATCTTTAACAGATAGATGATGTTTGATTGT 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5