BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06220.2 Length=3119 Score E Sequences producing significant alignments: (Bits) Value Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1 2161 0.0 Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3 1199 0.0 > Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1 Length=2746 Score = 2161 bits (1170), Expect = 0.0 Identities = 1276/1327 (96%), Gaps = 7/1327 (1%) Strand=Plus/Plus Query 1798 TTTGGCTGTAACAGAAGCGAGTTTTATTGACATGACCTCATCCTCAACTGATGGAGAGTC 1857 |||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1422 TTTGGCAGTAACAAAAGCGGGTTTTATTGACATGAACTCATCCTCAACTGATGGAGAGTC 1481 Query 1858 AAGCTCATTTGACAAGGCTCTAGAGAGTGTAGATGGAGCTCTCGTTAGACTGGAAAGCTT 1917 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1482 AAGCTCATTTGACAAGGCTCTAGAGAGTGTAGATGAAGCTCTCGTGAGACTGGAAAGCTT 1541 Query 1918 GCTACAGCAGTTGCATGCATCAAGCTCATCTTCTGGAAAAGAGCAAATAAAAGCTGCTTG 1977 ||||||| | |||||||||||||||||| |||||||||| || ||||||||||||||||| Sbjct 1542 GCTACAGAAATTGCATGCATCAAGCTCAGCTTCTGGAAAGGAACAAATAAAAGCTGCTTG 1601 Query 1978 CTCTGACCTAGAAAAGATAAGGAAGCTCAAGAAAGAGGCTGAATTTTTAGAGGCATCTTT 2037 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1602 CTCTGACCTAGAAAAAATAAGGAAGCTCAAGAAAGAGGCTGAATTTTTAGAGGCATCTTT 1661 Query 2038 CAGAGCCAAAGCAGCTTCCCTCCAAGAGGGAGGTGGTGACAGTGACTCTCAGGAGTACTC 2097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1662 CAGAGCCAAAGCAGCTTCCCTCCAAGAGGGAGGTGGTGACAGTGACTCTCAGGAGTACTC 1721 Query 2098 TGAGGAACAAAGCCAGTATCTAAGAGGAAAAGACCCAAAGAATTCAATAAATTCTGTAGA 2157 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1722 TGAGGAACAAAGCCAGTATCTAAAAGGAAAAGACTCAAAGAATTCAATAAATTCTGTAGA 1781 Query 2158 TCAAGGCAC--A-AGGGATAGTGGATTCTGGGGGTTCTTTGTTCGTACTCCAA-AAGGGA 2213 ||||||||| | |||||| ||||||||||||||||||||||||| ||||||| || ||| Sbjct 1782 TCAAGGCACAAATAGGGATCGTGGATTCTGGGGGTTCTTTGTTCGCACTCCAAGAA-GGA 1840 Query 2214 AGCCTGGCCCCGAGTCATTGACAGATAAATATTTTGAGAAATCCAGAGAAAATGTAGATA 2273 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1841 AGCCTGGCCCCGAGTCATTGACAGATGAATATTTTGAGAAATCCAGAGAAAATGTTGATA 1900 Query 2274 ATGTGGATTCCAACCCCAATGAGATCTATCGGTTCGAACTTCTAAGGAACGAACTGATAG 2333 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1901 GTGTGGATTCCAACCCCAATGAGATCTATCGGTTCGAACTTCTAAGGAACGAACTGATAG 1960 Query 2334 AGCTGGAGAAGCGTGTCCAAGGAAGTACAGATGAGTCGGGACGAACCTCTGAAGATCTGC 2393 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | Sbjct 1961 AGCTGGAGAAGCGTGTCCAAGGAAGCACAAATGAGTCGGGACGAACCTCTGAAGATCTTC 2020 Query 2394 CTAAATCAAGCAGCAGTACGAAAGGTGTGCAGTTGGTTCAGAGCTCAAAGAAAGAAAACG 2453 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 2021 CTAAATTAAGCAGCAGTATGAAAGGTGTGCAGTTGGTTCAGAGCTCAAAGAAAGAAAGCG 2080 Query 2454 TCATTGAGAAAACTCTTGACCAACTTAAAGATGCCACTACGGACGTGTGGCAGGGTACTC 2513 ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct 2081 TCATTGAGAAAACTCTTGACCAACTTAAAGAAACCAGTACGGACGTGTGGCAAGGTACTC 2140 Query 2514 AGCTTCTTGCGTTTGATTCAGCTGCTGCTATGGAGCTCCTTCGGAGGTCTGTGGTAGGAG 2573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2141 AGCTTCTTGCGTTTGATTCAGCTGCTGCTATGGAGCTCCTTCGGAGGTCTGTGGTAGGAG 2200 Query 2574 ATGAATTAACAGAGAAAGAAAAGAAAGCACTACGCAGAACCATGACCGACTTAGCATCAG 2633 ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| Sbjct 2201 ATGAATTAACAGAGAAAGAGAAGAAAGCCCTACGCAGAACCATGACTGACTTAGCATCAG 2260 Query 2634 TTGTTCCCATTGGTGTTCTTATGCTTCTTCCTGTCACAGCAGTTGGTCATGCGGCTATGC 2693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2261 TTGTTCCCATTGGTGTTCTTATGCTTCTTCCTGTCACAGCAGTTGGTCATGCGGCTATGC 2320 Query 2694 TTGCTGCAATTCAGAGATATGTGCCAGGCTTGATACCTTCGACCTACGGAGCCGAAAGGT 2753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2321 TTGCTGCAATTCAGAGATATGTGCCAGGCTTGATACCTTCGACCTACGGAGCCGAAAGGT 2380 Query 2754 TGAACCTGTTGAGACAGCTCGAGAAGGTCAAGCAAATGCAAACAAATGAAACTGAGCCTG 2813 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2381 TGAACCTGTTGAGACAGCTCGAGAAGGTCAAGCAAATGCAAACAAATGAAACAGAGCCTG 2440 Query 2814 AAGAAGGCATTGATGA-ACCAGAATCATGACTAGATCAAGAAACATAAAATCAGTATTTA 2872 |||||||||||||||| || ||||||||||||||||||||||||||||| ||||| | || Sbjct 2441 AAGAAGGCATTGATGATAC-AGAATCATGACTAGATCAAGAAACATAAATTCAGTCTATA 2499 Query 2873 CCTCAAGGAATCACTTTGTTCTATAGTTCATTGACAAGAGTTGCGCATAGAGGATCTCAT 2932 ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2500 CCTTAAGAAATCACTTTGTTCTATAGTTCATTGACAAGAGTTGCGCATAGAGAATCTCAT 2559 Query 2933 TCCATGTATCTGGTACACCGGGTAGGCACCAGTGGCTACAGTCTTGAGGAACATCAACAG 2992 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 2560 TCCATGTATCTGGTACGCCCGGTAGGCACCAGTGGCTACAGTCTTGAGGAACATCAACAG 2619 Query 2993 AAGTGCCTTGCTCTCGATACCGAGAAATATGACCATCTTTCCTAAACTCTGTCAGATATG 3052 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2620 AAGTGCCTTGCTCTCGATACCGAGAAATATGACCATCTTTCCTGAACTCTGTCAGATATG 2679 Query 3053 TAATGTTCAGAAACTTAACCTTACTATGTCGATATCTCATTTCTTCAATTACTTTATAGA 3112 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2680 TAATGTTCAGAAACTTAAGCTTACTATGTCGATATCTCATTTCTTCAATTACTTTATAGA 2739 Query 3113 TATATTC 3119 |||||| Sbjct 2740 CATATTC 2746 Score = 1930 bits (1045), Expect = 0.0 Identities = 1224/1306 (94%), Gaps = 29/1306 (2%) Strand=Plus/Plus Query 170 ATGTCCGTTGGAACCTTGATTTCGTGCAGAAGAGTGCTACAATTGGATTATATATCAAAC 229 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || | | Sbjct 1 ATGTCCGTTGGAACCTTTATTTCCTGCAGAAGAGTGCTACAATTGGATTATATTTCTAGC 60 Query 230 TGCTGCGGAAATTCCAGGACTCAATTGTTTGTGACC--T-ATG--AT-G---ATAAGAAC 280 |||||||||||||| |||| ||| |||||||||||| | ||| | | | |||||| Sbjct 61 TGCTGCGGAAATTCGAGGAGTCAGTTGTTTGTGACCTATCATGTTCTGGACAACAAGAAC 120 Query 281 TACTTTCTTCAGAGAAAACTTTTTGGAAACAAGAAAATGA----G--T---TCACGGAGG 331 ||||||||||||||||||||||||||||||||||| |||| | | || |||||| Sbjct 121 TACTTTCTTCAGAGAAAACTTTTTGGAAACAAGAAGATGAGTTGGTATAAATCGCGGAGG 180 Query 332 ACTACCCAGCCTTTTCTCCTTGCATCTGCTGAAGATGGAGTGGCTGTTAAT---GG---- 384 |||| ||| ||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 181 ACTATGCAGTCTTTTCTCCTTGCATCTGCTGAAGACGGAGTCGCTGTTAATGGGGGTTCC 240 Query 385 --GTCAAGAGCTAGCGATGATGTTCAGGAGATGAGGGCCAA-ACTCAGTGGATCACTACA 441 ||||||| | |||||||||||| |||||||||||| ||| |||||||||||||||||| Sbjct 241 CAGTCAAGACCCAGCGATGATGTTGAGGAGATGAGGG-CAATACTCAGTGGATCACTACA 299 Query 442 AGATGAATATAGCTGTGGTGAACTTATTCAGTCTTTGCATGATGCTGCCAGGACTTTTGA 501 ||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 300 AGATGAATACAGCTGTGGTGAACTCATTCAATCTTTGCATGATGCTGCCAGAACTTTTGA 359 Query 502 ACTGGCTCTTAAAGAGAAGATATCTTCTTCGAGATTACCATGGTTTTCAGCAGCCTGGCT 561 |||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 360 ACTGGCACTTAAAGAGAAGATTTCATCTTCCAGATTACCATGGTTTTCAGCAGCCTGGCT 419 Query 562 CGGAGTTGATAGAAATGCATGGGTTAAGACGTTTTCTTATCAGGCTTCCGTGTATTGCTT 621 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 GGGAGTTGATAGAAATGCATGGGTTAAGACATTTTCTTATCAGGCTTCCGTGTATTGCTT 479 Query 622 ACTACAAGCTGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGT 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACTACAAGCTGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGT 539 Query 682 CTTTGTACAAAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAA 741 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTTTGTGCAAAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAA 599 Query 742 ACTATCTTCCAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGGGCAAGTTCCTTCGGC 801 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 600 ACTATCTTCCAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGAGCAAGTTCCTTCGGC 659 Query 802 GGTGACATCTTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCTACTTCTGT 861 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 660 GGTGACATCTTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCAACTTCTGT 719 Query 862 CTATGTCAAAAGCAATTCCACAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCT 921 |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTATGTCAAAGGCAAGTCCTCAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCT 779 Query 922 TGTGCTGAATTGCATCGCAGCAGTGACAAAACTTGGCCCAACAAAACTTTCGTGCCCGCC 981 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 780 TGTGCTGAATTGCATCGCAGCAGTGACAAAACTTGGCCCGACAAAAATTTCGTGCCCGCC 839 Query 982 CTTCTTTTCTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGGGTTTGT 1041 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 840 CTTCTTTTCTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGACTTTGT 899 Query 1042 TCCACTTCCTCAGACCTATCATTCAATGAAAACCCTTGGTCTTCGCAGAGAATTTCTTCT 1101 |||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||| | Sbjct 900 TCCACTACCTCAGGCCTATCATTCAATGAAAAGCCTCGGTCTTCGCAGAGAATTTCTTGT 959 Query 1102 TCATTTTGGACCTCGGGCAGCAGCATGCAGAGTAAAAAGTGACTGTGATACAGATGAGGT 1161 ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| Sbjct 960 TCATTTTGGACCTCGGGCAGCGGCATGCAGAGTAAAAAGTGACTGCGGTACAGATGAGGT 1019 Query 1162 TGTCTTCTGGGTAGATCTTATACAAAACCAACTGCTGAGGGCTATTGATCGGGAGAAAAT 1221 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TGTCTTCTGGGTCGATCTTATACAAAACCAACTGCTGAGGGCTATTGATCGGGAGAAAAT 1079 Query 1222 ATGGTCAAGATTAATAACGTCTGAAAGTATAGAGGTTTTGGATAGAGATTTAGCTATTTT 1281 |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1080 ATGGTCAAGATTAACAACGTCTGAAAGTATCGAGGTTTTGGAAAGAGATTTAGCTATTTT 1139 Query 1282 TGGATTCTTCATTGCCTTGGGCAAGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTCAG 1341 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1140 TGGATTCTTCATTGCCTTGGGCAGGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTCAG 1199 Query 1342 TTCGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCACTTCATTGGGGGAAGTCTCCTACA 1401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTCGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCACTTCATTGGGGGAAGTCTCCTACA 1259 Query 1402 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAG 1447 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAG 1305 Score = 124 bits (67), Expect = 3e-27 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 1602 AGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATCCTTCTAATGTCAAGGCAGCAAAAT 1661 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1304 AGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATCCTTCTAATGTCAAGGCCGCGAAAT 1363 Query 1662 TCTTATCCAAGGG 1674 ||||||||||||| Sbjct 1364 TCTTATCCAAGGG 1376 > Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3 Length=3183 Score = 1199 bits (649), Expect = 0.0 Identities = 1130/1357 (83%), Gaps = 54/1357 (4%) Strand=Plus/Plus Query 350 CTT-GCATCTGCTGAAGATGGAGTGGCTGTTAATGG--GT-C-AAG---AG--CTAGCGA 399 ||| |||||||||||||||||||||||| | ||||| || | ||| || |||| | Sbjct 301 CTTGGCATCTGCTGAAGATGGAGTGGCTATCAATGGAAGTCCTAAGCCAAGATCTAG-TA 359 Query 400 -TGATGTT-CAGGAGATGAGGGCCAAACTCAGTGGATCACT-ACAAGATGAATATAGCTG 456 | || || ||| |||||| | || ||| |||||| | |||||||||| | |||| Sbjct 360 GTAAT-TTGGGGGAAATGAGGACTAATTTCACCGGATCA-TCACAAGATGAAAACAGCTC 417 Query 457 TGGTGAACTTATTCAGTCTTTGCATGATGCTGCCAGGA-CTTTTGAACTGGCTCTTAAAG 515 | || |||||| |||||||||||||||||||| | || || ||||| |||| ||| || Sbjct 418 TAATGGACTTATCCAGTCTTTGCATGATGCTGCTA-GATCTATTGAATTGGCAGTTAGAG 476 Query 516 AGAAGA-TATCTTCTTCGAGATTACCATGGTTTTCAGCAG-CCTGGCTCGGAGTTGATAG 573 |||||| || || | || ||||| ||||||||| | || | ||||||| || | ||||| Sbjct 477 AGAAGATTA-CTCCGTCCAGATTTCCATGGTTTCCTGC-GACCTGGCTTGGTGCTGATA- 533 Query 574 AA-ATGCATGGGTTAAGACGT-TTTCTTATCAGGCTTC-CGTGTATTGCTTACTACAAGC 630 || |||||||||| ||||| | |||| ||||||||||| | |||| | |||||||||||| Sbjct 534 AATATGCATGGGTGAAGAC-TCTTTCGTATCAGGCTTCTC-TGTACTCCTTACTACAAGC 591 Query 631 TGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGTCTTTGTACA 690 | |||||| ||||||||||||| || | |||||||| ||| ||||||||||||| || Sbjct 592 AGTTAATGAGATTTCATCTAGAGGCAATTACAGAGACGAGGATATTAATGTCTTTGTTCA 651 Query 691 AAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAAACTATCTTC 750 |||||| |||||||||||||||||||| ||||| | ||||||||| || || |||||||| Sbjct 652 AAGGAGCTTATCACGCCAAGCTGCTCCCCTTGAGAATATGATGCGAGAGAATCTATCTTC 711 Query 751 CAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGGGCAAGTTCCTTCGGCGGTGACATC 810 || |||||| ||||| |||| ||||||||||| | |||| ||||||| | ||||||||| Sbjct 712 CAAACATCCTAAAGCCTATGAATGGTTTTGGTCCGAGCAACTTCCTTCCGTGGTGACATC 771 Query 811 TTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCTACTTCTGTCTATGTCAA 870 ||||||||||| | |||||||||||||||| |||||| |||| ||||||||||||| ||| Sbjct 772 TTTTGTGAATTATATTGAGGGGGACCAACGTTTTGTTGCTGCCACTTCTGTCTATG-CAA 830 Query 871 AA-GCAATTCCACAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTGA 929 || | || ||| |||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 831 AAGGAAAGTCCGCAGCCGCAAGTAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTCA 890 Query 930 ATTGCATCGCAGCAGTGACAAAACTTGGCCCAACAAAACTTTCGTGCCCGCCCTTCTTTT 989 ||||||| |||||| | || ||| ||||||| ||||| |||| |||||||||||||| | Sbjct 891 ATTGCATTGCAGCAATCACGAAAGTTGGCCCGGCAAAATTTTCCTGCCCGCCCTTCTTCT 950 Query 990 CTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGGGTTTGTTCCACTTC 1049 || ||||||||||||| || || ||||||||||| ||| |||| | || |||||||| | Sbjct 951 CTATGATTCCAGATACAACTGGAAGATTGATGGAAAAACTTGTAGACTTCGTTCCACTCC 1010 Query 1050 CTCAGACC-TATCATTCAATGAAAACCCTTGGTCTTCGCAGAGAATTTCTT-CTTCATTT 1107 |||| | | ||||||||||| |||| | | || || | ||||| |||||| || ||||| Sbjct 1011 CTCA-AGCGTATCATTCAATCAAAAGCATAGGCCTACAAAGAGAGTTTCTTACT-CATTT 1068 Query 1108 TGGACCTCGGGCAGCAGCATGCAGAGTAAAAAGTGAC-TGTGATACAGATGAGGTTGTCT 1166 ||| ||||| ||||||| |||||||| || ||||| | || ||||||||| ||||| | Sbjct 1069 TGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT-TGCTACAGATGAAGTTGTTT 1127 Query 1167 TCTGGGTAGATCTTATACA-AAACCAACTGCTGAGGGCTATTGATCGGGAGAAAATATGG 1225 ||||| | ||||||||||| |||| |||||| | ||||||| ||| |||||||||||||| Sbjct 1128 TCTGGATCGATCTTATACAGAAAC-AACTGCAGCGGGCTATAGATAGGGAGAAAATATGG 1186 Query 1226 TCAA-GATTAATAACGTCTGAAAGTATAGAGGTTTTGGATAGAGATTTAGCTATTTTTGG 1284 |||| | |||| ||| || |||||||||||||||||||| ||||||||||| |||||||| Sbjct 1187 TCAAAG-TTAACAACATCCGAAAGTATAGAGGTTTTGGAGAGAGATTTAGCAATTTTTGG 1245 Query 1285 ATTCTTCATTGCCTTGGGCAAGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTC-AGTT 1343 |||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| | || Sbjct 1246 ATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGCTGCAAATGGTTTTGA-TT 1304 Query 1344 CGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCA-CTTCATTGGGGGAAGTC-TCCTACA 1401 | |||||||||||| ||||||||||||||||||| ||| |||||||| || | |||| | Sbjct 1305 CTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTT-ATTGGGGGCAG-CGTCCTGTA 1362 Query 1402 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAGGTTGTCTGTGAAGA 1461 |||||||| |||||| |||||||||| |||||| |||||||||||||||| || ||||| Sbjct 1363 CTATCCTCAACTTTCATCCATCAGTTCATACCAGCTGTATGTAGAGGTTGTTTGCGAAGA 1422 Query 1462 ACTAGATTGGATTCCTTTCTATCCAGCCAGAAA--GGACTCCCAGCCAGCCGAA-CAATC 1518 |||||| ||||||||||||||||||| || | | || | | ||||| || || ||||| Sbjct 1423 ACTAGAATGGATTCCTTTCTATCCAGACA-ATACTGG-CACACAGCCT-CCAAAACAATC 1479 Query 1519 ACACGGGCATAAAAGCAGACCACAAGGGCCACCTAATTATGATGCTCTTCCACAGA-TAT 1577 ||| |||||||| |||| | || |||| |||||||||||||| | | |||| || | | | Sbjct 1480 ACATGGGCATAAGAGCAAAACAGAAGGACCACCTAATTATGAAGTTATTCCCCA-ACTGT 1538 Query 1578 TGAATGTTTGCTCTTATTGGCTACAGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATC 1637 || ||||||||||||||||||||||||| |||||||| || || |||||||| ||||||| Sbjct 1539 TGGATGTTTGCTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATGGCCAGAGAATC 1598 Query 1638 CTTCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1674 | ||||||||||||||||||||||||||||||||||| Sbjct 1599 CATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117813127785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5