BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06260.1 Length=1697 Score E Sequences producing significant alignments: (Bits) Value Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 2185 0.0 Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 219 7e-56 > Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 Length=1412 Score = 2185 bits (1183), Expect = 0.0 Identities = 1349/1427 (95%), Gaps = 20/1427 (1%) Strand=Plus/Plus Query 267 ATGGGAAATTCGAA-T--TCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCT 323 |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60 Query 324 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTCCCTCGCTTCCAATTCT 383 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120 Query 384 CAGAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 443 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 180 Query 444 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACGCAGGAAAGATGATAAAATGACT 503 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 181 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACT 240 Query 504 TATGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGACGATGAGATTGCT 563 | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 241 TTTGAAGATCTTGTTATTGCTAAGGCAACCTACGAGAAAGGAACTGATGATGAGATTGCT 300 Query 564 GAGTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGTCAAGGTCTGATTTA 623 |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| Sbjct 301 GAGTTTATTTACCAGACTTTGGATGTAAATGGCAATGGGGTCTTGACAAGGCCTGATTTA 360 Query 624 GAGTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAA 683 |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 361 GAGTCGGTACTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAAAGTTCTGATGCAGAA 420 Query 684 TCAAGTGATTAC-AAGAAGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATC 742 |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 421 TCAAGTGATTACAAAG-AGATGGTGGATGCGCTACTCAATGCCGCCACTTTCTCAAAATC 479 Query 743 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCTCATTCGT 802 ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 480 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAGGATTTCAGAAGCTGGTGCTCACTCGT 539 Query 803 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 599 Query 863 ATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 922 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 ATATCAAGTCCCGCATCTGCTTTATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 659 Query 923 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCTTGTAGAGTGGAA 982 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 660 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAA 719 Query 983 GCTGTTGTATCACAGTTCCGTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATC 1042 |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 720 GCTGCTGTATCACAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTAGGACACACATC 779 Query 1043 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAAGGATATGTGTATGG 1102 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 780 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAGGGATGTGTGTACGG 839 Query 1103 AGGGTACGCCTCTCAACCTTGGGAGAGGTACAGCGATTTCTATGGAGACATGAAGTCTTT 1162 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 840 AGGATACGCCTCTCAACCTTGGGAGAGGTATAGCGATTTCTATGGAGACATGAAGTCTTT 899 Query 1163 TCTTTTCCAGCTTAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAACAT 1222 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 900 TCTTTTCCAGCTAAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAATAT 959 Query 1223 TCAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCGAATGGGATAGGATTTGGAGG 1282 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960 ACAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCAAATGGGATAGGATTTGGAGG 1019 Query 1283 TAAGATAAATCACTTTGGCCTGTTTATATCAGCAAGCTTCGATCAAGGCCAGACATTCGA 1342 ||| || ||||||||||| || |||||||||||||||||||| |||||||||||||| || Sbjct 1020 TAAAATCAATCACTTTGGTCTCTTTATATCAGCAAGCTTCGACCAAGGCCAGACATTTGA 1079 Query 1343 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGAT 1402 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1080 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATACAGCCAGAAGTGAT 1139 Query 1403 AGAATGCTGGGGAATCGTTCAGGCCTCAAATGAACAAGACACCAAACATAACGCCATGAA 1462 |||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| Sbjct 1140 AGAATGCTGGGGAATCGTTCAGGCCTCAAACGAACAAGACACCAAACACAATGCTATGAA 1199 Query 1463 AGGTACTGTTCTGGAGAGGTTTAAGGAAGATCGCAACATGCTCAAACTAGTCGGCATGGC 1522 |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1200 AGGTACTGTTCTAGAGAGATTTAAGGAAGATCGAAACATGCTCAAACTAGTCGGCATGGC 1259 Query 1523 AGGCAATTCAAATGATTGAATAGAGAATTTAGGTTCTGAGATTCAATCTTAGATATACAC 1582 ||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||||||| Sbjct 1260 AGGCAATTCAAATGATTGA-TAGAGGATTTTGGTTCTGAGATTTAATCTTAGATATACAC 1318 Query 1583 TCAACGTTCGTATACATTGT-GAGAGTGAGTGTGCAAAAACATTATGTACAATAAAGAGT 1641 | |||||| ||||||||| | ||| ||||||||||||| |||||||||||| || | Sbjct 1319 TAAACGTTTGTATACATT-TCGAGTGTGAGTGTGCAAATACATTATGTACATTA-----T 1372 Query 1642 GTTGTATGATTCATACCATTTCCATTTCACTTGAATCACATCAAAAT 1688 | | || ||||||| |||||||||||||||||||||||||||| Sbjct 1373 G----A--AT-CATACCAGTTCCATTTCACTTGAATCACATCAAAAT 1412 > Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 Length=1314 Score = 219 bits (118), Expect = 7e-56 Identities = 143/155 (92%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 852 GTGAGACCTGGATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGG 911 |||||||||| |||||||||||| |||||||| ||||||||||||||| | ||||||||| Sbjct 409 GTGAGACCTGAATATCAAGTCCCACATCTGCTTTATGAAGATAGTGTGGGCTCAGATAGG 468 Query 912 CTACTATT-AAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCT 970 |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 469 CTACTATTAAAAGAAGGAATACGCTTGGCATATTGGAGGGGCTCTTCCTCACCACGAGCT 528 Query 971 TGTAGAGTGGAAGCTGTTGTATCACAGTTCCGTAC 1005 || ||||||||||||| |||||||| ||||| ||| Sbjct 529 TGAAGAGTGGAAGCTGCTGTATCACTGTTCCTTAC 563 Score = 178 bits (96), Expect = 1e-43 Identities = 106/111 (95%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 640 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGA 699 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 299 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCTGAATCAAGTGATTACAAGG 358 Query 700 AGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATCTGATGATG 750 |||||||||||| ||||||||||||| |||||| ||||||||||||||||| Sbjct 359 AGATGGTGGATGTGCTACTCAATGCCACTACTTCCTCAAAATCTGATGATG 409 Score = 176 bits (95), Expect = 5e-43 Identities = 114/123 (93%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 267 ATGGGAAATTCGAATTCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCTTTT 326 |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 ATGGAAAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTT 60 Query 327 ACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTC-CCTCGCTTCCAATTCTCA 385 ||||||||||||||||||||||||||||| |||||| ||| ||||| |||||| ||||| Sbjct 61 ACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTC-TCTTACCTCGATTCCAAGTCTCA 119 Query 386 GAG 388 ||| Sbjct 120 GAG 122 Score = 161 bits (87), Expect = 1e-38 Identities = 99/105 (94%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1367 CCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 1426 |||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 558 CCTTACCAAAACGAGCATAATACAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 617 Query 1427 CTCAAATGAACAAGACACCAAACATAACGCCATGAAAGGTACTGT 1471 |||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 618 CTCAAACGAACAAGACACCAAACATAACACCATGAAAGGTACTGT 662 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63648799395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5