BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06280.1 Length=981 Score E Sequences producing significant alignments: (Bits) Value Ahg487437 jgi|Araly1|487437|fgenesh2_kg.6__571__AT5G06280.1 1144 0.0 > Ahg487437 jgi|Araly1|487437|fgenesh2_kg.6__571__AT5G06280.1 Length=889 Score = 1144 bits (619), Expect = 0.0 Identities = 834/930 (90%), Gaps = 45/930 (5%) Strand=Plus/Plus Query 33 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACTCAACTCCGCCGTACAAAATCC 92 |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| Sbjct 1 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACGCCGCTCCGTCGTACAAAATCC 60 Query 93 ATATCCAACATGACGACTCTAACTCCTCCAGAAGTTCCTTTCGACATAGCTTCAACGCCG 152 ||||||| |||||| ||| | |||||||| ||| ||||||||||||| |||||||||||| Sbjct 61 ATATCCACCATGACCACTTTGACTCCTCCCGAAATTCCTTTCGACATGGCTTCAACGCCG 120 Query 153 CCGTCTTCGTTCGATTACGAGCTCATCTCCGTAAAACCATCCTCTTTCGTAGCTTACACT 212 ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| Sbjct 121 CCGTCTTCGTTCGATTATGAGCTCATCTCCATTAAACCATCCTCTTTCGTAGCTTACACT 180 Query 213 TCTCTCAGAGATATCATCTCTTCTCCGATTAACTCTTCACTCAATTTACCGTCGATCAAC 272 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 181 TCTCTCAGAGATATCATCTCTTCTCCGAGTAACTCTTCACTCAATTTACCGACGATCAAC 240 Query 273 GGTAGCTGCTCTCCTGTTATATCCACCGCCGCCGGAGATATCTCGATTCGTAACCGTCTC 332 ||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 241 GGTAGCTTCTCTCCGGTTATATCCACCGCCG--G-AGATATCTCGATTCGTAACCGTCTC 297 Query 333 GTTAAGCAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCAGATGATTCT 392 |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 298 GTTAAGAAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCGGAGGATTCT 357 Query 393 GCTGGTTCTCAATTCTTCCGCCGCGTTTGGCTTCACTTATCCGCCGGGTTTCAGTTCTTG 452 ||||||||||||||||||||||| || ||| |||| ||||||||||| ||| ||||||| Sbjct 358 GCTGGTTCTCAATTCTTCCGCCGTGTATGGATTCATTTATCCGCCGGAATTCGGTTCTTG 417 Query 453 CGACGTGTGTTTGATTGGATTTTTCAATCGTTTCGTGTTCCTTTGATTGTCAAATAAACT 512 ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 418 AGACGTGTATTTGATTGGATTTTTCAATCGATTCGTGTTCCTTTGATTGTCAAATAGA-T 476 Query 513 TTGATT-TG-ACA-AAGGAAGTGAT-GGATTTGGTGAGAGTGCTCTGATGCAGTAAAGCT 568 | ||| || | | || ||||||| ||||||||||||||| | ||| | | | | Sbjct 477 T--ATTCTGCAGATAAAGAAGTGAAAGGATTTGGTGAGAGT--T-TGA-G-A--A----T 523 Query 569 TGAGGATGTATATGTTTGTTTTGAATACCTTATAGATGGTGAATTGTTGTTGCAATTGCT 628 | | ||||||||||||| || ||||||| |||||||||||||||||||||||||| Sbjct 524 -G----T--ATATGTTTGTTTT-AA-ACCTTATCGATGGTGAATTGTTGTTGCAATTGCT 574 Query 629 TGAAGATTTGGAGGCTCCAGTGGAAGATACATTGCAGTAGTTGAGCAATTACTAAATGTC 688 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 575 TGAAGATTTGGAGGCTCCAGTGGAAGCCACATTGCAGTAGTTGAGCAATTACTAAATGTC 634 Query 689 CTCTTATCTTTAAGACAGAGATTCCTTGATCGATGTCAGATTCATGTTTTGACATGTATG 748 |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 635 CTCTTATCTTTAAGACGGAGATTCCTTGATCGATGTCCGATTCATGCTTTGACATGTATG 694 Query 749 GACATAGTAGCTTCTCGTAGACATAGCTAAGTCCCTGTTAGAAACCAAGAGAAGAAGATT 808 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 695 GACATAGTAGCTTCTCATAGACATAGCTAAGTCCCTGTCAGAAACCAAGAGAAGAAGATT 754 Query 809 GGTCGTTTTGTGAATCTAAGAATGAGAATGAATTCTCATTAGATTTTTATTGCATTGTAC 868 ||| ||| ||||||| |||||||| | || ||||| |||||||| |||||||||| Sbjct 755 GGT--TTT-GTGAATCAAAGAATGA-A-TG----CTCATGAGATTTTTCTTGCATTGTA- 804 Query 869 TGTAGTTAGTACCTGTGATTTCGGGTAACATAAGTAGATGAGAAGAGCGATTTTGATCTC 928 ||| | | ||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 805 -GTA-T--G-ACCTGTGATTTCGGGTACCATAAGTAGACGAGAAGAGCGATTTTGATCTC 859 Query 929 TCCGTAGAGTGGTAACCTGCGGATAGATGA 958 ||||||||||||||||| ||| ||||||| Sbjct 860 ACCGTAGAGTGGTAACCTACGGTTAGATGA 889 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36445508652 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5