BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06290.1 Length=1203 Score E Sequences producing significant alignments: (Bits) Value Ahg940065 jgi|Araly1|940065|scaffold_600609.1 1153 0.0 Ahg928878 jgi|Araly1|928878|scaffold_301335.1 704 0.0 > Ahg940065 jgi|Araly1|940065|scaffold_600609.1 Length=840 Score = 1153 bits (624), Expect = 0.0 Identities = 786/859 (92%), Gaps = 32/859 (4%) Strand=Plus/Plus Query 159 ACAGAGTCAATGTCAATGGCGTCTATAGcttcttcttcttccaccaccc-tactctcttc 217 ||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||| Sbjct 9 ACAGAGT-TATGTCAATGGCGTCTATAGCTTCTTCTTCCACCACCACCCTTA-TCTCTTC 66 Query 218 ctctagggttcttcttccctccaagtcttctcttttatctcctaccgtctctttccCCAG 277 |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 67 CTCTAGGGTTCTTCTTCCCTCCAAGTCTTCTCTTATATCTCCCGCCGTGTCTTTCCCCAG 126 Query 278 AATCATACCCTCTTCCTCGGCATCATCCTCTTCTCTCTGTTCCGGGTTCTC-CAGTCTCG 336 | | | | | || |||||| || ||| |||||| ||||| | ||||| Sbjct 127 ----A-A--C-C-T--TC-GCATCA------TC-CTC--TTCCGGATTCTCTC-GTCTC- 163 Query 337 GTT-CCCTCACCACCA-ACCGCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGC 394 ||| |||| ||| ||| | | ||||||||||||||||| ||||| ||||||||| ||||| Sbjct 164 GTTCCCCTAACCTCCAGA-CTCTCCGCCTCACGCCGGAGCTTCGTCGTCAAGGCACAGGC 222 Query 395 TGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGA 454 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 223 CGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAGGCAGAGGCAGTTTTTGA 282 Query 455 TCAAGAGTTCATAAAGGTGAAGCTCTCTGAGTACATTGGCAAAAAGTATGTTATTCTATT 514 |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 283 TCAAGAGTTCATCAAGGTGAAGCTCTCTGAGTACATTGGGAAAAAGTATGTCATTCTATT 342 Query 515 CTTCTACCCTTTGGACTTCACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCG 574 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 343 TTTCTACCCTTTGGACTTCACTTTTGTTTGCCCCACAGAGATTACTGCCTTCAGTGACCG 402 Query 575 TTATGAAGAATTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTT 634 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 403 CTATGAAGATTTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCAGTCGACAGTGTGTT 462 Query 635 CTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCGGGAGGGCTCGGTGATCTGAATTA 694 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 463 CTCGCATCTCGCGTGGGTCCAAACAGACAGAAAGTCAGGAGGGCTCGGTGATCTGAATTA 522 Query 695 TCCTCTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 754 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 CCCACTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 582 Query 755 TCAGGGCATTGCACTGAGAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTC 814 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 583 CCAGGGCATTGCACTGAGAGGACTTTTCATCATCGACAAGGAAGGAGTCATTCAGCATTC 642 Query 815 CACCATCAACAACCTCGGTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 874 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 643 CACCATCAACAACCTTGGTATTGGTCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 702 Query 875 ATTACAGTATGTTCAAGAAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGGGA 934 |||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 703 ATTACAATATGTTCAGGAAAACCCGGATGAAGTTTGCCCTGCGGGATGGAAGCCCGGGGA 762 Query 935 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 822 Query 995 AAGATTGAACACAT-GTTT 1012 || | |||||| || |||| Sbjct 823 AAAACTGAACA-ATTGTTT 840 > Ahg928878 jgi|Araly1|928878|scaffold_301335.1 Length=934 Score = 704 bits (381), Expect = 0.0 Identities = 555/640 (87%), Gaps = 8/640 (1%) Strand=Plus/Plus Query 355 GCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGCTGATGAT-TTACCACTGGTC 413 ||||| | || ||||||| ||| || ||||| || ||||| |||||| || |||||||| Sbjct 187 GCTCCACTTCTCGCCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTT-CCACTGGTT 245 Query 414 GGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGATCAAGAGTTCATAAAGGTG 473 || || |||||||||||||| || || ||||| || |||||||| |||||||| ||||| Sbjct 246 GGAAACAAGGCGCCTGATTTCGAGGCAGAGGCTGTGTTTGATCAGGAGTTCATCAAGGTT 305 Query 474 AAGCTCTCTGAGTACATTGGCAAA-AAGTATGTTATTCTATTCTTCTACCCTTTGGACTT 532 |||||||||||||||||||| ||| |||||||| ||||| ||||||||||| |||||||| Sbjct 306 AAGCTCTCTGAGTACATTGG-AAAGAAGTATGTGATTCTCTTCTTCTACCCATTGGACTT 364 Query 533 CACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCGTTATGAAGAATTTGAGAA 592 |||||| |||||||| || ||||||||||||||||||||||| || |||||||||||| Sbjct 365 CACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATTTGAGAA 424 Query 593 GCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTTCTCGCATCTTGCGTGGGT 652 | | ||||||||| ||||||| | |||||||| ||||||||||| || ||||| ||||| Sbjct 425 GTTGAACACCGAAATATTAGGTATTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGGT 484 Query 653 CCAAACAGACA-GAAAGTCGGGAGGGCTCGGTGATCTGAATTATCCTCTTGTTTCGGATA 711 ||||||||||| |||| || |||||||| |||||| |||| ||||| ||| |||| ||| Sbjct 485 CCAAACAGACAGGAAA-TCTGGAGGGCTTGGTGATTTGAACTATCCCCTTATTTCAGATG 543 Query 712 TCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCACTGA 771 |||||||||| || ||||| || |||||||||||||||| ||||||||| || ||||||| Sbjct 544 TCACTAAATCAATCTCAAAGTCTTTTGGAGTGCTCATCCATGATCAGGGAATAGCACTGA 603 Query 772 GAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCTCG 831 ||||||| ||||| || |||||||||||||| || || ||||||||||||||||| || | Sbjct 604 GAGGGCTCTTCATAATTGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCTTG 663 Query 832 GTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTATGTTCAAG 891 ||||||||||||| |||||||||||||||||||||||||||||||||||||| | || | Sbjct 664 GTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCAGG 723 Query 892 AAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGG-GAGAAATCAATGAAACCT 950 ||||||||||||| || ||||| |||||||||||||| ||| ||||| |||||||||||| Sbjct 724 AAAACCCGGATGAGGTCTGCCCAGCGGGATGGAAGCC-GGGTGAGAAGTCAATGAAACCT 782 Query 951 GACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGA 990 ||||| || ||||||||||| ||||| |||||||| |||| Sbjct 783 GACCCGAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGA 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44908796226 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5