BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06300.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487440 jgi|Araly1|487440|fgenesh2_kg.6__574__AT5G06300.1 1616 0.0
> Ahg487440 jgi|Araly1|487440|fgenesh2_kg.6__574__AT5G06300.1
Length=1000
Score = 1616 bits (875), Expect = 0.0
Identities = 963/1004 (96%), Gaps = 12/1004 (1%)
Strand=Plus/Plus
Query 45 agagagagagagagagagacaaagtaacaaagag-aaagagagaga-a-atatggaagag 101
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1 AGAGAGAGAGAGAGAGAGACAAAGTAACAAAGAGAAAAGAGAGAGAGAGATATGGAAGAG 60
Query 102 acaaaatcgagattcaagagGATCTGTGTCTTCTGTGGAAGCAGTTCCGGCAAAAAACCT 161
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACAAAATCGAGATTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCTGGCAAAAAACCT 120
Query 162 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 180
Query 222 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 240
Query 282 GGTCGCCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACTGGTGAG 341
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GGTCGTCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACCGGTGAG 300
Query 342 ACCATCGGAGAAGTTAAAGCCGTGGCCGATATGCATCAAAGGAAAGCTGAAATGGCTCGC 401
|||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 301 ACCATCGGAGAAGTGAAAGCCGTCGCCGATATGCATCAAAGAAAAGCCGAAATGGCTCGT 360
Query 402 CAAGCCGACGCATTCATTGCCCTTCCTGGTGGGTATGGTACGTTAGAAGAATTGCTGGAA 461
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CAAGCTGACGCTTTCATTGCCCTTCCTGGTGGGTATGGTACGTTGGAAGAATTGCTGGAA 420
Query 462 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 480
Query 522 GGTTACTACAACTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 581
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTTACTACAATTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 540
Query 582 CCAATGGCTCGTCGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 641
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCAATGGCTCGTAGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 600
Query 642 GAGGAATATGAACCGGAGTTTGATGAGATAACATCAAAATTGGTTTGGGATGAAGTGGAC 701
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GAGGAATATGAACCGGAGTTCGATGAGATAACATCGAAATTGGTTTGGGATGAAGTGGAC 660
Query 702 CGGATAAGTTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATGTATTATGGGG 761
||| | || |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 661 CGGCTCAGCTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATATAATATGGGG 720
Query 762 AGTTTATTTTTTGGTAAAAGCAGTGTACAGCGGAAATTAA-GTTGTTTAACATCAGAAGG 820
||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 721 AGTTTATTTTTGGGTAAAAGCAGTGTACAGCGGAA-TTAAAGTTTTTTAACATCAGAAGG 779
Query 821 TAAGGGCGGAAAGAAGACAAAAGAAAGTATTGGGGTCGTTTTGATAAACATTATTTTGTA 880
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 AAAGGTCGGAAAGAAGACGAAAGAAAGTATTGGGGTCGTTTTGATAA-CATTATTTTGTA 838
Query 881 GGGGTGGTTTAAATGTGTGAAGTGGATAAACCATGTGGGTAACTGCTAACCGCGTATATA 940
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 GGGGTGGTT-AAATGTGTGAAGTGGATAAACCACGTGGGTAACTGCTAACCGCGTATATA 897
Query 941 CCAAACCCTATCACTCCCCACTTGTCTTTGTACATTTTGGTTTAATGGaaaaaa--a-GG 997
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 898 CCAAACCCCATCA-TCCCCACTTGTCTTTGTACATTTTGGTTTAATGGAAAAAATGAAGG 956
Query 998 ATAGGGC-TATTTTCAAGAAATGACAAAACGATCCTTTTCTTTT 1040
||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 957 ATAGGGCCTATTATCAACAAATGACAAAACGATCCTTTTCTTTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5