BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06320.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940069 jgi|Araly1|940069|scaffold_600613.1 1208 0.0
Ahg478510 jgi|Araly1|478510|fgenesh2_kg.3__1211__AT3G11650.1 279 2e-74
Ahg497322 jgi|Araly1|497322|fgenesh2_kg.222__1__AT3G11650.1 274 9e-73
Ahg934165 jgi|Araly1|934165|scaffold_402153.1 111 7e-24
> Ahg940069 jgi|Araly1|940069|scaffold_600613.1
Length=736
Score = 1208 bits (654), Expect = 0.0
Identities = 710/737 (96%), Gaps = 3/737 (0%)
Strand=Plus/Plus
Query 38 TGAGGCATTTTAACGAACAGATGGCGGACTTAAACGGTGCGTATTACGGACCATCGATTC 97
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGGCATTTTAACGAACACATGGCGGACTTAAACGGTGCGTATTACGGACCATCGATTC 60
Query 98 CACCGCCGAAGAAAGTCTCTCACAGCCACGGCAGACGCGGCGGTGGATGCGGTTGTTTAG 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACCGCCGAAGAAAGTCTCTCACAGCCACGGCAGACGCGGCGGTGGATGCGGTTGTTTAG 120
Query 158 GTGACTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGACTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAA 180
Query 218 CCATAGCCGTCTTATTAGGCATAGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACG 277
|||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 181 CCATAGCCGTCTTACTAGGCATAGCTGCTTTGATCATCTGGCTCATTTTCCGACCCAACG 240
Query 278 CTATCAAATTCCACGTCACCGACGCTAAACTCACCGAATTCACACTCGACCCAACCAACA 337
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 241 CTATCAAATTCCACGTCACCGATGCTAAGCTCACCGAATTCACACTCGACCCAACCAACA 300
Query 338 ACCTCCGATACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCGGATCGGTG 397
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 301 ACCTCCGATACAATCTCGACCTCAATTTCACAATCCGTAACCCTAATCGACGGATCGGTG 360
Query 398 TTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGTATGAGTA 457
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGCATGAGTA 420
Query 458 ACAACATCTCGAAGTTTTACCAGGGACATAAGAACACGACGGTGGTTGGAACTAAACTCG 517
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ACAACATCTCGAAGTTTTACCAGGGACATAAGAACACGACAGTGGTTGGAACTAAACTC- 479
Query 518 TG-GGACAGCAATTGGTGCTGCTTGACGGCGGAGAGAGGAAGGATTTGAACGAGGATGTG 576
| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TCCGGACAGCAATTGGTGATGCTTGACGGCGGAGAGAGGAAGGATCTGAACGAGGATGTG 539
Query 577 AATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGATTAGGTTTAAGTTTGGG 636
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 540 AATTCTCAGATCTATAGGATCGATGCGAAGCTTAGACTTAGGATTAGGTTTAAGTTTGGG 599
Query 637 TTGATCAAGTCGTGGAGGTTCAAGCCCAAGATCAAGTGCGATCTCAAGGTTCCTCTTACC 696
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 600 TTGATCAAGTCGTGGAGGTTCAAGCCAAAGGTCAAGTGTGATCTCAAGGTTCCTCTTACC 659
Query 697 TCTAATTCAACCAGCGGGTTTGTTTTTCAGCCGACCAAGTGTGACGTTGACTTTTGATTG 756
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TCTAATTCAACCAGCGGGTTTGTGTTTCAGCCGACCAAGTGTGACGTTGACTTTTGATA- 718
Query 757 CTAGTCAAGAGTCAATG 773
|||||||| ||||||||
Sbjct 719 CTAGTCAAAAGTCAATG 735
> Ahg478510 jgi|Araly1|478510|fgenesh2_kg.3__1211__AT3G11650.1
Length=788
Score = 279 bits (151), Expect = 2e-74
Identities = 465/612 (76%), Gaps = 39/612 (6%)
Strand=Plus/Plus
Query 162 CTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCAT 221
|||||| |||||||||| ||||| ||||||||| | |||| ||||||||||||| ||||
Sbjct 156 CTGTCTACGCTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCCAT 215
Query 222 AGCCGTCTTATTAGGC-AT-AGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACGCT 279
|||||| | | || || | | | | | ||| |||||||||| ||| | || |||||
Sbjct 216 AGCCGTAATCCT-CGCAATCA-CCGGTTTTATCCTCTGGCTCATATTCCGTCCAAACGCC 273
Query 280 ATCAAATTCCACGTCACCGACGCTAAACT-CACCGAATTCACAC-TCGACCCAACCAACA 337
|||||||| ||||| |||||||||| || |||| ||||| | |||| ||| |||||
Sbjct 274 GTCAAATTCTACGTCGCCGACGCTAATCTGAACCG-ATTCA-GCTTCGATTCAAACAACA 331
Query 338 AC--C--TC-CGA-TACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCG-G 390
|| | || | | |||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 332 ACAGCAATCTCCATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACGAG 391
Query 391 ATCGGTGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGT 450
|||| || ||||| ||||| ||| || || || || |||||||||||| |||||||
Sbjct 392 -TCGGAGTCTACTACGATGAGATCTCGGTGAGTGGCTATTACGGTGATCAGAGATTCGG- 449
Query 451 ATGAGTAACAACATCTCGAAGTTTTACCA-GGGACATAAGAACACGACGGTGGTTGGAAC 509
|| || | | | | ||| |||||| || ||| |||||||| ||||||||| || |||
Sbjct 450 ATCTGTGA-A-CGTATCGTCGTTTTATCAAGGG-CATAAGAATACGACGGTGATTTTAAC 506
Query 510 TAAACTCGTGGGACAGCAAT-TGGTGCTGCTTGACGGCGGAGAGAGGA-AGGATTTGAAC 567
||| | | |||||| ||| ||||| |||| | || ||||| ||| | || || ||||
Sbjct 507 AAAAATTGAAGGACAG-AATCTGGTGGTGCTCGGCGACGGAGCGAGAACAG-ATCTGAAG 564
Query 568 GAGGATGTGAATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGA-TTAGGTT 626
|| |||| ||| ||| | | ||| |||| ||||| || || | || ||| || ||||
Sbjct 565 GAAGATGAGAAATCTGGGGTTTATCGGATTGATGCGAAATTGCGGCT-AAGTGTTCGGTT 623
Query 627 TAAGTTT-GGGTTGATCAAGTCGTGGAGG-TTCAAGCCCAAGATCAAGTGCGATC-TC-- 681
||||||| |||| ||| |||||||||| | || || || ||||| ||||| ||| ||
Sbjct 624 TAAGTTTTGGGT-GATTAAGTCGTGGAAGCTTAAA-CCAAAGATTAAGTGTGATGATCTT 681
Query 682 AAGGTTCCTCTTA---CCTCTAATTCAACCAGCGGGTTTGTTTTTCAGCC-GACCAAGTG 737
||| |||||||| |||||||||||||| | |||||| ||||| || | | |||||
Sbjct 682 AAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTTTAAGTTTCAACCAGTC-AAGTG 740
Query 738 TGACGTTGACTT 749
||| |||||||
Sbjct 741 TGATTTTGACTT 752
> Ahg497322 jgi|Araly1|497322|fgenesh2_kg.222__1__AT3G11650.1
Length=788
Score = 274 bits (148), Expect = 9e-73
Identities = 464/612 (76%), Gaps = 39/612 (6%)
Strand=Plus/Plus
Query 162 CTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCAT 221
|||||| |||||||||| ||||| ||||||||| | |||| ||||||||||||| ||||
Sbjct 156 CTGTCTACGCTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCCAT 215
Query 222 AGCCGTCTTATTAGGC-AT-AGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACGCT 279
|||||| | | || || | | | | | ||| |||||||||| ||| | || |||||
Sbjct 216 AGCCGTAATCCT-CGCAATCA-CCGGTTTTATCCTCTGGCTCATATTCCGTCCAAACGCC 273
Query 280 ATCAAATTCCACGTCACCGACGCTAAACT-CACCGAATTCACAC-TCGACCCAACCAACA 337
|||||||| ||||| |||||||||| || |||| ||||| | |||| ||| |||||
Sbjct 274 GTCAAATTCTACGTCGCCGACGCTAATCTGAACCG-ATTCA-GCTTCGATTCAAACAACA 331
Query 338 AC--C--TC-CGA-TACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCG-G 390
|| | || | | |||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 332 ACAGCAATCTCCATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACGAG 391
Query 391 ATCGGTGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGT 450
|||| || ||||| ||||| ||| || || || || |||||||||||| |||||||
Sbjct 392 -TCGGAGTCTACTACGATGAGATCTCGGTGAGTGGCTATTACGGTGATCAGAGATTCGG- 449
Query 451 ATGAGTAACAACATCTCGAAGTTTTACCA-GGGACATAAGAACACGACGGTGGTTGGAAC 509
|| || | | | | ||| |||||| || ||| || ||||| ||||||||| || ||
Sbjct 450 ATCTGTGA-A-CGTTTCGTCGTTTTATCAAGGG-CACAAGAATACGACGGTGATTTTAAG 506
Query 510 TAAACTCGTGGGACAGCAAT-TGGTGCTGCTTGACGGCGGAGAGAGGA-AGGATTTGAAC 567
||| | | |||||| ||| ||||| |||| | || ||||| ||| | || || ||||
Sbjct 507 AAAAATTGAAGGACAG-AATCTGGTGGTGCTCGGCGACGGAGCGAGAACAG-ATCTGAAG 564
Query 568 GAGGATGTGAATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGA-TTAGGTT 626
|| |||| ||| ||| | | ||| |||| ||||| || || | || ||| |||||||
Sbjct 565 GAAGATGAGAAATCTGGGGTTTATCGGATTGATGCGAAATTGCGGCT-AAGTGTTAGGTT 623
Query 627 TAAGTTT-GGGTTGATCAAGTCGTGGAGG-TTCAAGCCCAAGATCAAGTGCGATC-TC-- 681
||||||| |||| ||| |||||||||| | || || || ||||| ||||| ||| ||
Sbjct 624 TAAGTTTTGGGT-GATTAAGTCGTGGAAGCTTAAA-CCAAAGATTAAGTGTGATGATCTT 681
Query 682 AAGGTTCCTCTTA---CCTCTAATTCAACCAGCGGGTTTGTTTTTCAGCC-GACCAAGTG 737
||| |||||||| |||||||||||||| | |||||| ||||| || | | |||||
Sbjct 682 AAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTTTAAGTTTCAACCAGTC-AAGTG 740
Query 738 TGACGTTGACTT 749
||| |||||||
Sbjct 741 TGATTTTGACTT 752
> Ahg934165 jgi|Araly1|934165|scaffold_402153.1
Length=763
Score = 111 bits (60), Expect = 7e-24
Identities = 225/300 (75%), Gaps = 30/300 (10%)
Strand=Plus/Plus
Query 472 TTTTACCAGGGACATAAGAACACGACGGTGGTTGGAACTAA--ACTCGTG-GGAC--AGC 526
||||| |||||||||||||||||||||||||||||||| | ||| | |||| |||
Sbjct 456 TTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGTACTTGAACGGACTGAGC 515
Query 527 AATTGGTGCTGCTT-GACGGCGGAGAGA-GGA-AGGATTTGAACGAGGAT-GTGAATTCT 582
| ||| || || | || ||| | | ||| || || || | |||||| | || | ||
Sbjct 516 C-T-GGTTTTG-TTAGGCGCCGGTG-GCCGGAGAG-ATCTGGAGGAGGATCGGGAGT-CT 569
Query 583 CAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGATTAGGTTTAAGTTTGGGTTGATC 642
||| || ||||| | | ||||||||| ||||||| ||||||||||||||||| ||
Sbjct 570 GGGATTTACAGGATTGGCGTGAAGCTGAGATTTAAGATCAGGTTTAAGTTTGGGTTTTTC 629
Query 643 AAGTCGTGGAG--GTTCAAGCCCAAGATCAAGTG-CGATCTCAAGGTTCC-TCT---TAC 695
|| || ||| | ||| ||||||||| | ||||| | ||||||||||||| | | |||
Sbjct 630 AACTCATGG-GCCGTT-AAGCCCAAGTTTAAGTGTC-ATCTCAAGGTTCCGT-TGAATAC 685
Query 696 CTCTAATTCAACCAGCG-GG-TTTGTTTTTCAGCCGACCAAGTGTGACGTTGACTTTTGA 753
||||| |||| | | || || ||| ||||| || |||||||| |||||||| |||||
Sbjct 686 CTCTAGTTCAGC-A-CGAGGATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTTTGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5