BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06330.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940071 jgi|Araly1|940071|scaffold_600615.1 802 0.0
Ahg942036 jgi|Araly1|942036|scaffold_602580.1 564 4e-160
Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176 324 8e-88
Ahg940072 jgi|Araly1|940072|scaffold_600616.1 241 8e-63
Ahg951862 jgi|Araly1|951862|scaffold_22200002.1 222 3e-57
> Ahg940071 jgi|Araly1|940071|scaffold_600615.1
Length=689
Score = 802 bits (434), Expect = 0.0
Identities = 563/622 (91%), Gaps = 21/622 (3%)
Strand=Plus/Plus
Query 45 CACCGTCACCGGAGCT-----ATGACCTCAAAAGACTGTGGCTCTCACGACAGCCACTCA 99
|||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 CACCGTCACCGGAGCTCCGACATGACCTCAAAAGACTGTGGCGCTCACCACAGCCACTCA 60
Query 100 ---TCATGCAACCGTAAAAT-A------GTG--ATCTGGACGAT-ATCAATAATCCTCCT 146
||||||||||||||||| | ||| |||||| | || || |||||||||| |
Sbjct 61 TCCTCATGCAACCGTAAAATCATCCGCCGTGTAATCTGGCCAATAAT-AATAATCCTCTT 119
Query 147 CTTAATCCTTGTCGTAATTCTCCTAGTTTGGGCAATCCTTCAACCATCGAAACCACGCTT 206
| |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CATAATCCTTCTCATAATTCTCCTAGTTTGGGCAATCCTTCAACCATCAAAACCACGCTT 179
Query 207 CGTCCTCCAAGACGCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCT 266
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATCCTCCAAGACGCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCT 239
Query 267 CACCTCAAATTTCCAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTA 326
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CACCTCAAATTTCCAAATCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGAATCTA 299
Query 327 CTACGACCGTCTTGACGTCTACGCTTCTTACCGGAGCCAACAGATCACTTTGCCGAGTCC 386
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
Sbjct 300 CTACGACCGTCTTGACGTCTACGCTTCTTACCGGAGCCAACAAATCACTTTTCCGACTTC 359
Query 387 CATGCTTACCACTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGG 446
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATGCCTACGACTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGG 419
Query 447 ATACTCCGTTCCTGTGGCTCCGTACAACGCTTTCTATCTCGATCAGGACCATTCAAGTGG 506
|||||| || || || ||||| |||||||| || |||||||||||||||||| || ||||
Sbjct 420 ATACTCTGTCCCCGTAGCTCCTTACAACGCCTTGTATCTCGATCAGGACCATACACGTGG 479
Query 507 CGCGATCATGTTGATGCTTCATCTCGACGGTC-GAGTTCGTTGGAAAGTCGGATCCTTCA 565
| ||||||||||| |||||||||| ||||| | ||||||||||||||||||| |||||||
Sbjct 480 CACGATCATGTTGGTGCTTCATCTTGACGG-CAGAGTTCGTTGGAAAGTCGGTTCCTTCA 538
Query 566 TCACCGGAAAATATCATCTCCACGTTAGATGTCATGCGCTTATCAACTTCGGGAGTAGTG 625
||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||
Sbjct 539 TCACCGGAAAATATCATCTCCACGTTAGATGTCCGGCGTTTATCAACTTTGGGAATAGTG 598
Query 626 CTGCCGGAGTTATCGTCGGAAA 647
|| |||||||||||||||||||
Sbjct 599 CTTCCGGAGTTATCGTCGGAAA 620
> Ahg942036 jgi|Araly1|942036|scaffold_602580.1
Length=665
Score = 564 bits (305), Expect = 4e-160
Identities = 497/585 (85%), Gaps = 32/585 (5%)
Strand=Plus/Plus
Query 61 ATGACCTCAAAAGACTGTGGCTCTCACGACAGCCA--C-TCATCATGCAACCGTAAAATA 117
||||||||||||||||||||| ||||| ||||||| | |||||||||||||| |
Sbjct 34 ATGACCTCAAAAGACTGTGGCGCTCACCACAGCCACTCATCATCATGCAACCG-CCGCT- 91
Query 118 GTG--ATCTGGACGAT-ATCAATAATCCTCCTCTTAATCCTTGTCGTAATTCTCCTAGTT 174
||| |||||| | || || |||||||||| |||||||| || |||||||| ||||| ||
Sbjct 92 GTGTAATCTGGCCAATAAT-AATAATCCTCTTCTTAATCTTTCTCGTAATTTTCCTACTT 150
Query 175 TGGGCAATCCTTCAACCATCGAAACCACGCTTCGTCCTCCAAGACGCCACCGTCTTCAAC 234
|||||||||||||| ||||| ||||||||||| |||| | ||||||||||||| |||||
Sbjct 151 TGGGCAATCCTTCATCCATCAAAACCACGCTTTATCCTTCGAGACGCCACCGTCGTCAAC 210
Query 235 TTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAATTCACTCTCTCC 294
|||||||||||||||||||||||| | ||||||||||| |||| || |||||||||||
Sbjct 211 TTCAACGTCTCCGGCAATCCACCG---CACCTCACCTCAAGTTTCAAAATCACTCTCTCC 267
Query 295 TCTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTTGACGTCTACGCTTCT 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 268 TCTCGTAACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACGTCTACGCTTCT 327
Query 355 TACCGGAGCCAACAGATCACTT-TGCCGAGTCCCATGCTTACCACTTATCAAGGACACAA 413
||| ||| |||||||||||||| | |||| | |||||| || |||||||||||||| ||
Sbjct 328 TACGGGAACCAACAGATCACTTCT-CCGACTGCCATGCCGACGACTTATCAAGGACATAA 386
Query 414 AGAAGTCAACGTTTGGTCTCCTTTCGTCGGTGGATACTCCGTTC-CTGTGGCTCCGTACA 472
||||||||| | |||||||||||||||||||||| ||||| ||| | | ||||||||||
Sbjct 387 AGAAGTCAAAGATTGGTCTCCTTTCGTCGGTGGAAACTCCATTCACC-TCGCTCCGTACA 445
Query 473 ACGCTTTCTATCTCGATCAGGACCATTCAAGTGGCGCGATCATGTTGATGCTTCATCTCG 532
| || || ||||||| | | | | ||| ||||||||||||||||||||||
Sbjct 446 ATGCCTTGAATCTCGA---G--C-A-----G-GGCACGATCATGTTGATGCTTCATCTTA 493
Query 533 ACGGTC-GAGTTCGTTGGAAAGTCGG-ATCCTTCATCACCGGAAAATATCATCTCCACGT 590
|||| | |||||||||||||| | || | |||||||||||||||||||||||||| ||||
Sbjct 494 ACGG-CAGAGTTCGTTGGAAATTTGGTA-CCTTCATCACCGGAAAATATCATCTCTACGT 551
Query 591 TAGATGTCATGCGCTTATCAACTTCGGGAGTAGTGCTGCCGGAGT 635
|||||||| ||| |||||||| |||| | ||||||| |||||||
Sbjct 552 TAGATGTCGGGCGTTTATCAACATCGGTAATAGTGCTTCCGGAGT 596
> Ahg904048 jgi|Araly1|904048|Al_scaffold_0003_1176
Length=609
Score = 324 bits (175), Expect = 8e-88
Identities = 397/500 (79%), Gaps = 32/500 (6%)
Strand=Plus/Plus
Query 162 AATTCTCCT-AGTTTGGGCAATCCTTCAACCATCGAAA-CCACGCTTCGTCCTCCAAGAC 219
||| ||||| | |||||||||| || ||||| || ||| ||||| ||| |||||||||||
Sbjct 75 AATCCTCCTCA-TTTGGGCAATTCTCCAACCTTC-AAAGCCACGTTTCCTCCTCCAAGAC 132
Query 220 GCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTC 279
|||||||||| | ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 133 GCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCATCACCTCCAACTTC 192
Query 280 CAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTT 339
||| |||||||||| || || |||||||||||||||||||| | ||||||||||| |||
Sbjct 193 CAAATCACTCTCTCTTCCCGGAACCCTAACGACAAGATCGGCGTTTACTACGACCGCCTT 252
Query 340 GACGTCTACGCTTCTTACCGGAGCCAACAGATCACTTTGCCGAGTCC-CA-TGCTTACCA 397
|||||||||||| ||||||||||||||||||||||||| |||| | || | | | |||
Sbjct 253 GACGTCTACGCTACTTACCGGAGCCAACAGATCACTTT-CCGAA-CATCAATCCCTCCCA 310
Query 398 CTTATCAAGGACACAAAGAAGTCAACGTTTGGTCTCC-TTTCGTCGGTGGATAC-TCCGT 455
| ||||| |||||||||||||||||| | ||||| || ||| ||| ||| || |||||
Sbjct 311 CGTATCAGGGACACAAAGAAGTCAACATCTGGTCGCCGTTT-GTCTACGGA-ACCTCCGT 368
Query 456 TCCTGTGGCTCCGTACAACG-CTTTCTATCTCGATCAGGACCATTCAAG-T---GGCGCG 510
||| | ||||| | |||| | || |||||| | | || || ||| | |||||
Sbjct 369 TCCCATCGCTCCTTTTAACGGCGTTGG-TCTCGA-C-G-ACGATA-AAGATAACGGCGCC 423
Query 511 ATCATGTTGATGC-TTCAT-CTCGACGGTCGAGTTCGTTGGAAAGTCGG-ATCCTTCATC 567
|| |||||||| | ||| | || || ||| ||||||| ||||| || || | | || |||
Sbjct 424 ATTATGTTGAT-CATTCGTGCT-GATGGTAGAGTTCGGTGGAAGGTTGGGA-CTTTTATC 480
Query 568 ACCGGAAAATATCATCTCCACGTTA-GATGTCATGCGCT-TATCAACTTCGGGAGTAGTG 625
||||| || |||||||| | || | | || | ||| | ||| |||||||| | || |
Sbjct 481 ACCGGGAAGTATCATCTTTATGTGAAG-TGCCCGGCG-TATATTAACTTCGGTAATAAAG 538
Query 626 CTGCCGGAGTTATCGTCGGA 645
|| ||||||||||| |||||
Sbjct 539 CTACCGGAGTTATCATCGGA 558
> Ahg940072 jgi|Araly1|940072|scaffold_600616.1
Length=439
Score = 241 bits (130), Expect = 8e-63
Identities = 226/271 (83%), Gaps = 11/271 (4%)
Strand=Plus/Plus
Query 369 GATCACTT-TGCCGAGTCCCATGCTTACCACTTATCAAGGACACAAAGAAGTCAACGTTT 427
|||||||| || ||| | |||||| ||| |||||||||||||| |||||||| |||
Sbjct 2 GATCACTTCTG-CGACTGCCATGCCTACGACTTATCAAGGACATAAAGAAGT---TTTTT 57
Query 428 GGTCTCCTTTCGTCGGTGGATACTCCGTTCCTGTGGCTCCGTACAACGCTTTCTATCTCG 487
||||||||| |||||| ||| |||||||||| || ||||||| |||||| | ||||||
Sbjct 58 GGTCTCCTTACGTCGGGGGAAACTCCGTTCCCGTCGCTCCGTCCAACGCCGTGAATCTCG 117
Query 488 ATCAGGACCATTCAAGTGGCGCGATC-ATGTTGATGCTTCATCTCGACGGTC-GAGTTCG 545
| |||| ||||||| |||||||||| || |||||||||||||| ||||| | ||||||
Sbjct 118 AGCAGGTCCATTCACTTGGCGCGATCAAT-TTGATGCTTCATCTTGACGG-CAAAGTTCG 175
Query 546 TTGGAAAGTCGGAT-CCTTCATCACCGGAAAATATCATCTCCACGTTAGATGTCATGCGC 604
|||||||||||| | |||||||||||||||||||||||||||| |||||||| | |||
Sbjct 176 TTGGAAAGTCGG-TACCTTCATCACCGGAAAATATCATCTCCATGTTAGATGCCCGGCGT 234
Query 605 TTATCAACTTCGGGAGTAGTGCTGCCGGAGT 635
|||||||||| | | | || ||||||||||
Sbjct 235 TTATCAACTTTTGTAATTGTTCTGCCGGAGT 265
> Ahg951862 jgi|Araly1|951862|scaffold_22200002.1
Length=515
Score = 222 bits (120), Expect = 3e-57
Identities = 176/203 (87%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 162 AATTCTCCT-AGTTTGGGCAATCCTTCAACCATCGAAA-CCACGCTTCGTCCTCCAAGAC 219
||| ||||| | |||||||||| || ||||| || ||| ||||| ||| |||||||||||
Sbjct 5 AATCCTCCTCA-TTTGGGCAATTCTCCAACCTTC-AAAGCCACGTTTCCTCCTCCAAGAC 62
Query 220 GCCACCGTCTTCAACTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTC 279
|||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 63 GCCACCGTCTACGCCTTCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCCAACTTC 122
Query 280 CAATTCACTCTCTCCTCTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTT 339
||| ||||||| || || ||||||||||| ||||||||||| | ||||||||||| |||
Sbjct 123 CAAATCACTCTTTCTTCCCGTAACCCTAATGACAAGATCGGCGTTTACTACGACCGCCTT 182
Query 340 GACGTCTACGCTTCTTACCGGAG 362
|| ||||||||| | ||||||||
Sbjct 183 GAAGTCTACGCTACCTACCGGAG 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5