BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06470.1 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg487456 jgi|Araly1|487456|fgenesh2_kg.6__590__AT5G06470.1 1186 0.0 > Ahg487456 jgi|Araly1|487456|fgenesh2_kg.6__590__AT5G06470.1 Length=720 Score = 1186 bits (642), Expect = 0.0 Identities = 694/720 (96%), Gaps = 0/720 (0%) Strand=Plus/Plus Query 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60 Query 61 TTGAAGCAAAGCTTAACTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGAAGCAAGGCTTAGCTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120 Query 121 GACGAAATAGTCGCTGAATCTGGTCAAAGCAAAGGTTGTGTTACACCAACACTACTAGAG 180 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 121 GACGAAATAGTCGCTGAATCTAGTCAAATCAAAGGTTGTGTTACACCAACACTACTAGAG 180 Query 181 CTTGAGGATGCAGAGGAACATAATCTTGAAGAAGAAAGAGGGATTCTTCTGGAGTTTAAA 240 ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 181 CTTGAAGATGCAGAGGAACAGAATCTTGAAGAAGAAAGAGGGATTCTTTTGGAGTTTAAA 240 Query 241 GAGAATTGCCCACCCGGAGGAGAAGATTCGGTTGTATTCTACACGACGGGCCTGCGAAGT 300 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || Sbjct 241 GAGAATTGCCCACCCGGGGGAGAAGATTCGGTTGTTTTCTACACGACGGGCCTGCGAGGT 300 Query 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360 Query 361 ATGTATAGAGAGAGAGACGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGTATAGAGAGAGAGATGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420 Query 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480 Query 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTACTACAAGGAATCTCA 540 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTGCTAGAAGGAATCTCG 540 Query 541 CAGGTTGATTCACCTTGCGAGTCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 CAGGTTGATTCGCCTTGCGAATCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600 Query 601 AATGGAAGCACAAGATTGCTTGCAGAGCATCACGATGAAGAGAGTAGTAATGATAATATG 660 ||||| ||| ||| |||||||| ||| ||||||||||| |||| |||||||||||| || Sbjct 601 AATGGGAGCTCAAAATTGCTTGTAGATCATCACGATGAGGAGACAAGTAATGATAATTTG 660 Query 661 TGGACAAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TGGACGAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5