BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06530.2
Length=2788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487463 jgi|Araly1|487463|fgenesh2_kg.6__597__AT5G06530.1 4008 0.0
Ahg485597 jgi|Araly1|485597|fgenesh2_kg.5__1589__AT3G52310.1 403 3e-111
> Ahg487463 jgi|Araly1|487463|fgenesh2_kg.6__597__AT5G06530.1
Length=2580
Score = 4008 bits (2170), Expect = 0.0
Identities = 2380/2482 (96%), Gaps = 11/2482 (0%)
Strand=Plus/Plus
Query 201 AGTTTTTGAAAAGGTCAAAATGTCAATGGAGAAGCCACCTTTGGCCTCCGGTTTAGCTCG 260
|||||| | ||| |||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 100 AGTTTTAGGAAACGTCATAATGTCAATGGAAAAGCCACCGTTGGCCTCCGGTTTAGCTCG 159
Query 261 AACACGATCGGAGCAGCTATATGAGACGGTTGCAGCAGACATAAGGTCACCTCACGGCTC 320
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 160 AACACGATCGGAGCAGCTATATGAGACGGTGGCAGCAGCCATCAGGTCACCTCACGGCTC 219
Query 321 CATGGACGCTAATGGTGTGCCTGCGACGGCTCCAGCAGCCGTTGGAGGAGGAGGAACGTT 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 220 CATGGACGCTAATGGTGTGCCTGCGACGGCTCCAGCAGCCGTTGGAGGAGGAGGGACCTT 279
Query 381 GTCGAGGAAATCAAGCCGGAGG-T--TGAT-GGGGATGTCTCCGGGGAGGAGTAGCGGCG 436
||||||||||||||||||||| | |||| |||| | ||||||||||||||| |||| |
Sbjct 280 ATCGAGGAAATCAAGCCGGAGGCTGATGATGGGGGCT-TCTCCGGGGAGGAGTGGCGGAG 338
Query 437 CCGGAACACACATAAGGAAGTCTAGGAGCGCTCAGCTTAAGCTCGAGCTAGAGGAAGTGA 496
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 339 CCGGAACGCATATAAGGAAGTCTAGGAGCGCTCAGCTTAAGCTCGAGCTAGAAGAAGTGA 398
Query 497 GTAGCGGCGCAGCTTTGAGCCGTGCGTCTAGCGCATCGCTCGGTCTTTCATTTTCCTTCA 556
| || ||||| ||| |||| ||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 399 GCAGTGGCGCTGCTCTGAGTCGTGCATCGAGCGCGTCGCTCGGGCTTTCCTTTTCCTTCA 458
Query 557 CCGGGTTTGCTATGCCGCCGGAGGAAATCTCCGACTCTAAACCGTTCAGCGACGACGAGA 616
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 459 CCGGGTTTGCTATGCCGCCGGAGGAAATCTCCGACTCGAAACCGTTCAGCGACGACGAGA 518
Query 617 TGATACCCGAAGATATTGAAGCGGGAAAGAAGAAGCCTAAGTTTCAAGCAGAACCAACAT 676
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 519 TGATACCCGAAGATATTGAAGCGGGAAAGAAGAAGCCTAAGTTTCATGCAGAACCAACAT 578
Query 677 TGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAAGTGGTGATCAAGAAATTGACTT 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAAGTGGTGATCAAGAAATTGACTT 638
Query 737 CATCTGTGGAGAAAGAGATATTAACTGGGATAAGTGGGAGTGTGAATCCTGGTGAAGTTC 796
| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 639 CTTCAGCGGAAAAAGAGATATTAACTGGGATAAGTGGGAGTGTGAGTCCTGGTGAAGTTC 698
Query 797 TTGCTCTCATGGGACCCTCAGGGAGTGGCAAAACAACTCTTCTTAGCTTACTTGCTGGTC 856
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 699 TTGCTCTCATGGGACCTTCAGGGAGTGGCAAAACAACTCTTCTTAGCTTACTCGCTGGAC 758
Query 857 GAATCTCTCAATCCTCTACTGGAGGCTCTGTTACTTACAACGACAAGCCTTACTCTAAAT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GAATCTCTCAATCCTCTACTGGAGGCTCTGTTACTTACAACGACAAGCCTTACTCTAAAT 818
Query 917 ACTTGAAAAGCAAGATTGGGTTTGTGACTCAAGATGATGTTCTGTTTCCTCATCTTACCG 976
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 819 ACTTGAAAAGCAAGATTGGGTTTGTGACTCAAGATGATGTTTTGTTTCCTCATCTTACCG 878
Query 977 TGAAAGAAACGCTAACCTATGCTGCTCGTCTGCGCTTACCCAAGACTCTTACGAGAGAGC 1036
||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 879 TGAAAGAAACGCTAACCTACGCTGCTCGTTTGCGCTTACCAAAGACTCTTACGAGAGAGC 938
Query 1037 AGAAGAAGCAACGAGCTTTAGACGTTATCCAAGAGTTGGGTTTAGAGAGATGCCAAGACA 1096
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 939 AGAAGAAGCAACGAGCTTTAGACGTTATTCAAGAGTTGGGTTTGGAGAGGTGCCAAGACA 998
Query 1097 CTATGATTGGTGGAGCATTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTA 1156
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CTATGATTGGAGGAGCATTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTA 1058
Query 1157 TTGGAAACGAGATCATCATTAATCCTTCTCTATTACTTCTTGATGAACCAACCTCTGGTT 1216
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1059 TTGGAAACGAGATCATCATTAATCCTTCTCTATTACTTCTTGATGAGCCAACCTCTGGTT 1118
Query 1217 TAGATTCCACCACTGCTCTTAGAACCATTCTGATGCTCCATGACATCGCCGAGGCGGGGA 1276
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1119 TAGATTCCACCACTGCTCTTAGAACCATTCTGATGCTCCACGATATCGCCGAGGCGGGGA 1178
Query 1277 AAACCGTGATCACAACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGGTTTGACAAGC 1336
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1179 AAACAGTGATCACAACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGATTTGACAAGC 1238
Query 1337 TGATTCTACTAGGAAGAGGAAGTCTTCTCTACTTTGGAAAATCATCAGAAGCTTTAGATT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1239 TGATTCTACTAGGAAGAGGAAGTCTTCTCTACTTTGGAAAATCATCAGAAGCTTTGGATT 1298
Query 1397 ACTTCTCTTCCATTGGATGCTCTCCTCTTATCGCCATGAATCCTGCAGAGTTCTTGCTCG 1456
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1299 ACTTCTCTTCTATTGGATGCTCTCCTCTTATCGCCATGAATCCTGCAGAGTTTTTGCTCG 1358
Query 1457 ATCTTGCCAACGGTAACATCAACGATATCTCTGTACCTTCTGAGTTAGATGATAGAGTTC 1516
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1359 ATCTCGCCAACGGTAACATCAATGATATCTCTGTGCCTTCTGAGTTAGATGACAGAGTTC 1418
Query 1517 AAGTTGGCAATTCAGGTAGAGAAACTCAAACTGGCAAGCCATCTCCTGCTGCTGTTCATG 1576
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 AAGTTGGCAATTCAGGCAGAGAAACTCAAACTGGCAAGCCATCTCCTGCTGCTGTTCATG 1478
Query 1577 AGTATCTAGTGGAGGCCTACGAGACTAGGGTTGCAGAACAGGAGAAGAAGAAACTATTGG 1636
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1479 AGTATCTAGTGGAGGCATACGAGACTCGGGTTGCAGAACAGGAGAAGAAGAAACTATTGG 1538
Query 1637 ATCCTGTGCCACTCGATGAAGAAGCTAAGGCCAAAAGTACGCGTCTAAAGCGCCAATGGG 1696
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1539 ATCCTGTGCCACTCGACGAAGAAGCTAAGGCCAAAAGTACGCGCCTAAAGCGCCAATGGG 1598
Query 1697 GAACGTGCTGGTGGGAGCAATATTGCATACTATTCTGCAGAGGACTCAAAGAACGGCGAC 1756
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1599 GAGCGGGCTGGTGGGAGCAATATTGCATACTGTTCTGCAGAGGACTCAAAGAACGGCGAC 1658
Query 1757 ACGAATACTTCAGTTGGTTGCGTGTTACGCAAGTTCTTTCCACAGCTGTCATTTTAGGTC 1816
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1659 ACGAATACTTCAGTTGGTTGCGTGTTACTCAAGTTCTTTCCACAGCTGTCATTTTAGGTC 1718
Query 1817 TTCTCTGGTGGCAGTCGGACATTAGGACTCCAATGGGACTACAAGATCAGGCTGGTTTGC 1876
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1719 TTCTCTGGTGGCAGTCGGACATTCGGACTCCAATGGGACTACAAGATCAGGCCGGTTTGC 1778
Query 1877 TCTTCTTCATAGCAGTTTTTTGGGGATTCTTCCCTGTTTTCACAGCGATCTTTGCGTTTC 1936
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1779 TCTTCTTCATAGCAGTTTTTTGGGGATTCTTCCCTGTTTTCACAGCAATCTTTGCGTTTC 1838
Query 1937 CGCAAGAGCGAGCGATGTTAAATAAGGAGAGAGCAGCGGATATGTACAGATTAAGCGCAT 1996
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1839 CGCAAGAGCGAGCGATGTTGAATAAGGAGAGAGCAGCAGATATGTACAGATTAAGCGCAT 1898
Query 1997 ATTTCCTAGCTCGAACCACGAGTGATCTCCCTCTCGACTTTATTCTACCTTCTCTCTTCC 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 ATTTCCTAGCTCGAACCACGAGTGATCTCCCTCTCGACTTTATTCTACCTTCTCTCTTCC 1958
Query 2057 TTCTTGTCGTCTATTTCATGACAGGTCTTCGGATCAGCCCATATCCCTTCTTCTTGAGCA 2116
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1959 TTCTCGTCGTCTATTTCATGACAGGTCTTCGGATTAGCCCATATCCCTTCTTCTTGAGCA 2018
Query 2117 TGCTCACAGTTTTCCTTTGCATCATCGCAGCTCAGGGACTCGGACTTGCAATTGGTGCCA 2176
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2019 TGCTAACAGTTTTCCTTTGCATCATTGCAGCTCAGGGACTGGGACTTGCAATTGGTGCCG 2078
Query 2177 TTTTAATGGATTTAAAGAAGGCTACGACTTTGGCTTCAGTAACTGTCATGACATTCATGC 2236
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2079 TTTTAATGGATTTAAAGAAGGCTACAACTTTGGCTTCAGTAACTGTCATGACATTCATGC 2138
Query 2237 TCGCCGGAGGATTCTTCGTCAAGAAAGTGCCGGTTTTCATATCGTGGATACGTTATCTAT 2296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 TCGCCGGAGGATTCTTTGTCAAGAAAGTGCCGGTTTTCATATCGTGGATACGTTATCTAT 2198
Query 2297 CTTTCAATTACCACACCTACAAGCTTCTTCTTAAAGTACAATATCAGGACTTCGCTGTGT 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2199 CTTTCAATTACCACACCTACAAGCTTCTTCTTAAAGTACAATATCAGGACTTCGCTGAAT 2258
Query 2357 CCATCAACGGGATGAGAATAGACAACGGACTAACTGAAGTAGCCGCACTCGTTGTCATGA 2416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2259 CCATCAACGGGATGAGAATAGACAATGGACTAACTGAAGTAGCCGCACTCGTTGTCATGA 2318
Query 2417 TATTCGGTTATCGCCTCCTCGCGTATCTGTCTCTAAGGCAAATGAAGATCGTAACATAAC 2476
| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 2319 TTTTCGGTTACCGCCTCCTCGCATATCTGTCTCTAAGGCAAATGAAGATAGCAACATAAC 2378
Query 2477 CCATTTTCCACACGAAGAAATCAAATAACATAGAAGAAGCA-TAA-A-A-A--GAGTGCA 2530
||||||||||||||||||||||||||||||||||||||||| ||| | | | ||||||
Sbjct 2379 CCATTTTCCACACGAAGAAATCAAATAACATAGAAGAAGCACTAAGACATAAAGAGTGCG 2438
Query 2531 TCAGATCTTGATGATCTTGACACGACCAATCCTTGACAATGATTAAGAGATTGGTCCTAA 2590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2439 TCAGATCTTGATGATCTTGACACGACCAAGCCTTGACAATGATTAAGAGATTGGTCCTAA 2498
Query 2591 GATTATTCTTGCTTAATTACAAAGGTGTTGTGAGTTTGATAATGATTGGATGGTGATAGA 2650
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499 GATTATTCTTTCTTAATTACAAAGGTGTTGTGAGTTTGATAATGATTGGATGGTGATAGA 2558
Query 2651 TGTCTTGATTGGAGATAAATAT 2672
||||||||||||||||||||||
Sbjct 2559 TGTCTTGATTGGAGATAAATAT 2580
> Ahg485597 jgi|Araly1|485597|fgenesh2_kg.5__1589__AT3G52310.1
Length=2308
Score = 403 bits (218), Expect = 3e-111
Identities = 657/862 (76%), Gaps = 58/862 (7%)
Strand=Plus/Plus
Query 655 AAGTTTCAAGCAGAACCAACATTGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAA 714
|||||||| ||||||||||| || || || | ||| ||||||| ||| | ||||||||
Sbjct 400 AAGTTTCAGGCAGAACCAACCTTTCCGATATATCTTAAGTTCATAGATATCACATACAAG 459
Query 715 GTGGTGATC-AAGAAATTGACTTCATCTGTGGAG-AAAGAG-ATATT-AACTGGGATAAG 770
|| || | ||| || |||| || || | || |||||| || || || ||| || ||
Sbjct 460 GTAACGACCAAAGGAA-TGACATCTTC-AT-CAGAAAAGAGCATCTTGAA-TGGAATTAG 515
Query 771 TGGGAGTGTG-A-ATCCTGGTGAAG-TTCTTGCTCTCATGGGACCCTCAGGGAGTGGCAA 827
| || | | | |||| || | || |||| |||||||||||||| || || ||||||||
Sbjct 516 T-GG-TTCAGCATATCCAGG-GGAGCTTCTAGCTCTCATGGGACCTTCTGGAAGTGGCAA 572
Query 828 AAC-A-ACT-CTT-CTTAGCTTACTTGCTGGTCGAATCTCTC-AATCCTCTACTG-GAGG 881
||| | ||| ||| | |||| | || | | |||| | || | || | | | ||
Sbjct 573 AACTACACTACTTAATGCGCTTGGTGGCAGATTTAATC-AGCAAAACATC--C-GTG-GG 627
Query 882 CTCTGTTA-CTTACAACGACAAGCCTTACTCTAAATACTTGAAAAGCAAGATTGGGTTTG 940
|| |||| | || || || ||||| || ||||| ||||||||| || ||| || ||||
Sbjct 628 TTC-GTTAGC-TATAATGATAAGCCATATTCTAAGCACTTGAAAACCAGGATCGGATTTG 685
Query 941 TGACTCAAGATGATGTTCTGTTTCCTCATCTTACC-GTGAAAGAAACGCTAACCTATGCT 999
|||||||||||||||||||||||||||| |||| | || ||||| || || ||||| |
Sbjct 686 TGACTCAAGATGATGTTCTGTTTCCTCA-CTTAACTGTAAAAGAGACACTGACCTACACA 744
Query 1000 GCTCGTCTGCG-CTTACCCAAGACTCTTACGAGAG-AGCAGAAG-AAGCAACGAGCT-TT 1055
|||| | | || ||| || || ||||| |||| || || ||||| || ||| ||||| ||
Sbjct 745 GCTCTTTTACGTCTT-CCTAAAACTCTCACGA-AGCAGGAGAAGGAA-CAAAGAGCTGTT 801
Query 1056 AGACGTTATCCAAGAG-TTGGGTTTAGAGAGATGCCAAGACACTATGATTGGTGGAG-CA 1113
|| || || |||||| |||| || || || ||||||||||| |||||||| || | ||
Sbjct 802 AGT-GTGATACAAGAGCTTGGATTG-GAAAGGTGCCAAGACACAATGATTGGAGG-GTCA 858
Query 1114 TTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTATTGGAAACGAGATCATC 1173
|| || || ||||| |||||||| |||||||||||||||| |||||| || ||||||||
Sbjct 859 TTTGTACGCGGTGTCTCAGGTGGGGAGAGGAAAAGAGTTTGTATTGGGAATGAGATCATG 918
Query 1174 ATTAATCCTTCTCTA-TTACTTCTTGATGAACCAACCTCTGGTTTAGATTCCACCACTGC 1232
| ||||||||| || || || ||||||||||| |||||| |||| || || || || ||
Sbjct 919 ACTAATCCTTCACTTCTT-CTCCTTGATGAACCCACCTCTAGTTTGGACTCTACTACCGC 977
Query 1233 TCTTAGAACCATTCTGATGCTCCAT-GACATCGCCGAGGCGGGGAAAACCGT-GATCACA 1290
||||| || ||| |||||| || | || || ||||||| ||||| | | | |||
Sbjct 978 TCTTAAAATTGTTCAGATGCTACAAAGT-ATAGCAAAGGCGGGAAAAACTATTG-TAACA 1035
Query 1291 ACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGGTTTGACAAGCTGATTCTACT-AGG 1349
|| || || || || || ||||||||||||||||| |||||||||||| || |||| ||
Sbjct 1036 ACAATCCACCAACCGTCAAGTAGGCTCTTCCATAGATTTGACAAGCTGGTTGTACTCAGC 1095
Query 1350 AAGAGGAAGTCTT-CTCTACTTTGGAAAATCATCAGAAGCTTTAGA-TTACTTCTCTTCC 1407
| ||||||| ||| || |||||||| ||| |||||||||| | | ||| ||| |||||
Sbjct 1096 A-GAGGAAG-CTTGCTTTACTTTGGGAAAGCATCAGAAGCAAT-GTCTTATTTCGCTTCC 1152
Query 1408 ATTGGATGCTCTCCTCTTA-TCGCCATGAATCCTGCAGAGTTCTTGCTCGATCTT-GCCA 1465
|| ||||| |||||||| | || ||||||| || |||||||||||||| || ||| || |
Sbjct 1153 ATAGGATGTTCTCCTCT-ACTCACCATGAACCCAGCAGAGTTCTTGCTGGA-CTTAGCTA 1210
Query 1466 ACGGTAACATCAACGATATCTC 1487
| || ||||| |||||||||||
Sbjct 1211 ATGGAAACATGAACGATATCTC 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105205256690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5