BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06860.1 Length=1169 Score E Sequences producing significant alignments: (Bits) Value Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 1594 0.0 Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 902 0.0 > Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 Length=1149 Score = 1594 bits (863), Expect = 0.0 Identities = 1042/1128 (92%), Gaps = 13/1128 (1%) Strand=Plus/Plus Query 47 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 106 ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89 Query 107 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 166 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||| Sbjct 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149 Query 167 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 225 ||| |||| | | |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208 Query 226 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 285 |||||||||| || |||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268 Query 286 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 345 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328 Query 346 CCGGTAC-AATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 402 ||||| | |||||||||||||||||| |||||||||||||| | || | |||||||||| Sbjct 329 CCGGT-CAAATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385 Query 403 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 462 | ||||| |||||||| |||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445 Query 463 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 522 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505 Query 523 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGTTCCATACCAGAGTCAT 582 |||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGAGTCAT 565 Query 583 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACATAACCAGCTCTCCGGTC 642 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 566 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACACAACCAGCTCTCCGGTC 625 Query 643 CAATACCCAAATCATTAGGCAACATCGACTTTAACCGGATCGATTTATCCCGCAACAAGC 702 | |||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||| Sbjct 626 CGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGATCGATTTCTCCCGGAACAAGC 685 Query 703 TCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAACAACCTGGTCTATTGACTTAT 762 || |||||||||||||||||||||||||| |||||||||| || ||||| ||||| |||| Sbjct 686 TCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGGTCCATTGATTTAT 745 Query 763 CAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATC 821 |||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 746 CAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGGCACTTGGTATC 804 Query 822 TTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGGTGCAGTGGACTGAAGCTCCT 881 |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||||| Sbjct 805 TTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGACTGAAACTCCT 864 Query 882 CTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGACACATCCCAACTGGAGGGAAA 941 ||||| |||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 865 CTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGACATATCCCAACAGGAGGGAAA 924 Query 942 CTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 925 CTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTTGTGTGGTGCTCCTCTT 984 Query 1002 GAAATTTGCAAGTAAACCAAGCTTATCTCTAGGATTACGAAAAAATATATTTGAGTCAAT 1061 ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||| Sbjct 985 GAAATTTGCAAGTGAACCAAGCTTGTCTCTAGGATTTCGAAAAAATCTATTTGAGTCAAT 1044 Query 1062 AATATAGACAAATATGTAATGTTATTCGGATTGATTAATAAAACATGAACCAAACCTCTC 1121 | || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 1045 A-TA--GACAAATATGTAATATTATTCGGATTGATTAATAAAACATGAACCAAAACTCGC 1101 Query 1122 ATTTGATGTATTCATAGCACATTTTCAAAATGTTTTATTTGATGGATT 1169 ||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 1102 CTTTGATGAATTCATAGCACATTTTCAAAGTGTTTGATTTGATGGATT 1149 > Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 Length=1062 Score = 902 bits (488), Expect = 0.0 Identities = 839/1004 (84%), Gaps = 42/1004 (4%) Strand=Plus/Plus Query 19 ACACCATGGATAAGACAGCGACATTGTGTCTCTTGTTCTTGTTCAC-AT--TCCTCACGA 75 |||| |||||||||||| |||| ||| ||||| |||||| ||| | ||||||||| Sbjct 5 ACACTATGGATAAGACAATGACA--CTGT-TCTTGCTCTTGTCCACTCTCCTCCTCACGA 61 Query 76 CCTGTTT-GTCTAAAGATCTCTGTAACCAAA-ATGACAAAAACACCCTCCTCAAGATCAA 133 | | ||| | |||||||||||||| | |||| |||||||||||||||||||||||||||| Sbjct 62 CTTCTTTAG-CTAAAGATCTCTGTCA-CAAAGATGACAAAAACACCCTCCTCAAGATCAA 119 Query 134 GAAATCTCTAAACAACCCTTATCACCTCGCTTCATGGGACCCTCAAA-CCGACTGTTGCT 192 |||||| |||||||||||||| |||||||| ||||||||||| |||| |||||||||||| Sbjct 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCC-CAAAACCGACTGTTGCT 178 Query 193 CCTGGTACTGCCTTGAGTGCGGCGACGCCACCGTTAACCACCGTGTTACCGCCTTAACCA 252 | |||||||| || |||||||||||||| ||||| |||||||| || || || ||| || Sbjct 179 CTTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCA 238 Query 253 TATTCTCCGGCCAGATCTCCGGTCAGATCCCGGCTGAAGTCGGTGACTTGCCGTATCTTG 312 || |||| ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 239 TACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTT- 297 Query 313 AGA-CCCTTGTCTTCCGCAAACTCTCTAACCTCACCGGT-ACAATCCAACCCACCATCGC 370 | ||||| |||||||||||||| |||||||||| ||| ||| |||||||||| ||||| Sbjct 298 ACTTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACA-TCCAACCCACTATCGC 356 Query 371 CAAACTCAAGAACCTC-CGAATGCTCAGGCTCAGCTGGACGAATCTGACAGGTCCAATTC 429 ||| |||||||| ||| | | ||||| || |||||||||||||| || ||||| ||| Sbjct 357 CAAGCTCAAGAATCTCACTTTT-CTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTC 415 Query 430 CTGACTTTATAAGTCAGCTCAAGAATCTCGAGTTC-TTAGAACTTTCCTTCAATGATCTC 488 |||| ||| | ||||||||||||||||| |||| | || || |||||||||||||||||| Sbjct 416 CTGAGTTTCTGAGTCAGCTCAAGAATCTTGAGTACATT-GACCTTTCCTTCAATGATCTC 474 Query 489 TCTGGTTCCATTCCAAGTTCTCTCTCTACGTTACCTAAAATCTTGGCTCTTGAACTTAGC 548 | ||||||||| ||||||||||||||| | ||||||||| || | |||||||||||| Sbjct 475 TATGGTTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGT 534 Query 549 AGGAACAAACTTACAGGTTCC-ATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCC 607 |||||||| ||||||||| || |||||||||||||||||| ||||| |||||| |||||| Sbjct 535 AGGAACAAGCTTACAGGT-CCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCC 593 Query 608 T-GACCTTCGCCTATCACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAA-C 665 | | | || ||||||||| ||||||||||| ||| | ||||| |||||| ||||||| | Sbjct 594 TAGTCTTTT-CCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATC 652 Query 666 ATCGACTTTAACCGGATCGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTG 725 ||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||| Sbjct 653 C-CGACTTTTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTG 711 Query 726 TTTGGTTCCAACAAAACAACCTGG-TCTATTGACT-TATCAAGAAACATGTTCCAGTTCG 783 ||||| | || ||||| || ||| || |||| | |||||||||||| ||||||||||| Sbjct 712 TTTGGAGCTAAAAAAACGACATGGATCG-TTGA-TATATCAAGAAACAAGTTCCAGTTCG 769 Query 784 ATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGA 843 || |||| |||||| | || |||| |||||| || ||||||| |||| ||||||| | Sbjct 770 ATCTCTCCAAGGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAA 829 Query 844 TCACTGGGAATATTCCGG-TGCAGTGGA-CTGAAGCTCCTCTTCAGTT-CTTCAATGTTA 900 |||| ||||||||||||| || |||||| | ||||| | ||||||| || |||||||| Sbjct 830 TCACAGGGAATATTCCGGCTG-AGTGGAGCA-AAGCTTATTTTCAGTTACT-CAATGTTA 886 Query 901 GCTACAACAAACTGTGTGGACACATCCC-AACTGGAGGGAA-ACTTCAGACATTTGATTC 958 |||| |||| | ||||||||| |||||| || |||| | | |||||| ||||||||| Sbjct 887 GCTATAACAGATTGTGTGGACGCATCCCCAAA-GGAGAGTTTA-TTCAGAGATTTGATTC 944 Query 959 TTATTCCTATTTTC-ACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001 |||||||| ||||| |||||||||||||||||||||| |||||| Sbjct 945 TTATTCCT-TTTTCCACAACAAGTGTTTGTGTGGTGCACCTCTT 987 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43612617048 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5