BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06870.1 Length=1166 Score E Sequences producing significant alignments: (Bits) Value Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 1714 0.0 Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 817 0.0 Ahg950055 jgi|Araly1|950055|scaffold_801942.1 416 2e-115 > Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 Length=1062 Score = 1714 bits (928), Expect = 0.0 Identities = 1011/1052 (96%), Gaps = 2/1052 (0%) Strand=Plus/Plus Query 15 AAAAACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 74 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAACACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 60 Query 75 ACTTCTTTAGCTAAAGATCTCTGTCATAAAGATGACAAAA-CTACCCTCCTCAAGATCAA 133 |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| Sbjct 61 ACTTCTTTAGCTAAAGATCTCTGTCACAAAGATGACAAAAAC-ACCCTCCTCAAGATCAA 119 Query 134 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGATCCCAAAACCGACTGTTGCTC 193 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCCCAAAACCGACTGTTGCTC 179 Query 194 TTGGTACTGCCTCGAGTGCGGCGACGCTACTGTCAACCACCGTGTCACTTCCCTAATCAT 253 ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 180 TTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCAT 239 Query 254 ACAAGACGGCGAGATCTCCGGTCAGATCCCCCCTGAAGTCGGTGACTTACCGTATCTTAC 313 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 ACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTTAC 299 Query 314 ATCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 373 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 359 Query 374 GCTCAAGAACCTCACTTTTCTCAGACTAAGCTGGACCAATCTCACCGGTCCGGTTCCTGA 433 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 GCTCAAGAATCTCACTTTTCTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTCCTGA 419 Query 434 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGACCTCTCTGG 493 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 420 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGATCTCTATGG 479 Query 494 TTCCATACCTAGTTCCCTCTCTTCATTACGTAAACTCGAGTATCTTGAACTTAGTAGGAA 553 ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 480 TTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGTAGGAA 539 Query 554 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAGGTCCCTAGTCT 613 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 540 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCCTAGTCT 599 Query 614 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAGTCACTAGGCAATCCCGACTT 673 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 600 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATCCCGACTT 659 Query 674 TTACCGCATCGATTTATCTCGGAACAAGCTTCAAGGCGATGCTTCAATCTTGTTTGGAGC 733 |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct 660 TTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTGTTTGGAGC 719 Query 734 TaaaaaaaCAACATGGATCGTTGATATATCAAGAAACATGTTCCAGTTCGATCTCTCCAA 793 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 720 TAAAAAAACGACATGGATCGTTGATATATCAAGAAACAAGTTCCAGTTCGATCTCTCCAA 779 Query 794 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAG 853 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 780 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAATCACAGGGAA 839 Query 854 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTGAATGTTAGCTATAACAGACT 913 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 840 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTCAATGTTAGCTATAACAGATT 899 Query 914 GTGTGGACGCATCCCCAAAGGAGAGTATATTCAAAGATTTGATTCTTATTCCTTTTTCCA 973 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 900 GTGTGGACGCATCCCCAAAGGAGAGTTTATTCAGAGATTTGATTCTTATTCCTTTTTCCA 959 Query 974 CAACAAGTGTTTATGTGGTGCACCTCTTCCTAGTTGCAAGTGAAGATTCCAGCAAAACCA 1033 |||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| || ||| Sbjct 960 CAACAAGTGTTTGTGTGGTGCACCTCTTCCCAGTTGTAAGTGAAGATTCAAGCGAAGCCA 1019 Query 1034 AGCATTATCTCTGATATACCAAATAATTAATC 1065 ||| |||||||| || ||||||||||| |||| Sbjct 1020 AGCTTTATCTCTAATGTACCAAATAATCAATC 1051 > Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 Length=1149 Score = 817 bits (442), Expect = 0.0 Identities = 816/992 (82%), Gaps = 43/992 (4%) Strand=Plus/Plus Query 46 TCTTGCTCTTGTCCACTCTCCTCCTCACGACT-TCTTTAG-CTAAAGATCTCTGTCA-TA 102 ||||| |||||| ||| | ||||||||| | ||||| | |||||||||| ||| | | Sbjct 32 TCTTGTTCTTGTTCAC-AT--TCCTCACGA-TCTCTTT-GTCTAAAGATCTTTGTAACCA 86 Query 103 AAGATGAC-AAAACTACCCTCCTCAAGATCAAGAAATCCCTAAACAACCCTTACCACCTC 161 || ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 87 AA-ATGACAAAAAC-ACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTG 144 Query 162 GCCTCATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCT 221 || || ||| | ||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 145 GCTTCGTGGCACCCCGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCC 204 Query 222 ACTGTCAACCACCGTGTCACTTCCCTAA-TCATACAAGACGGCGAGATCTCCGGTCAGAT 280 || || |||||||| ||||| |||||| | ||| |||| ||||||| |||||||| Sbjct 205 ACCGTTAACCACCGCGTCACCGCCCTAACT-ATATTCTCCGGCCAGATCTCTGGTCAGAT 263 Query 281 CCCCCCTGAAGTCGGTGACTTACCGTATCTT-ACATCCCTTATCTTCCGCAAACTCACTA 339 ||| ||||||||||||||||| ||||||||| | | ||||| |||||||||||||| ||| Sbjct 264 CCCTCCTGAAGTCGGTGACTTGCCGTATCTTGAAA-CCCTTGTCTTCCGCAAACTCTCTA 322 Query 340 ACCTCACTGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGAC 399 ||||||| ||||| ||||||||||| ||||| || ||||||||||||| | ||||| | Sbjct 323 ACCTCACCGGTCAAATCCAACCCACCATCGCTAAACTCAAGAACCTCAAGTACCTCAGGC 382 Query 400 TAAGCTGGACCAATCTCACCGGTCCGGTTCCTGAGTTTCTGAGTCAGCTCAAGAATCTTG 459 | || ||||| ||||| || ||||| ||||||| ||||| || |||||||||||||| | Sbjct 383 TCAGTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCG 442 Query 460 AGTACATT-GACCTTTCCTTCAATGACCTCTCTGGTTCCATACCTAGTTCCCTCTCTTCA 518 ||| | || || |||||||||||||| ||||||||||||||||| ||||| |||||| | Sbjct 443 AGTTC-TTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACG 501 Query 519 TTACGTAA-ACTCGAGTATCTTGAACTTAGTAGGAACAAGCTTACAGGTCCGATACCAGA 577 |||| ||| | || | ||||||||||| |||||||| ||||||||| | |||||||| Sbjct 502 TTACCTAATA-TCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGA 560 Query 578 GTCATTTGGGACGTTTTCAGGAA-AGGTCCCTAGTCTTTT-CCTATCACACAACCAGCTC 635 |||||||||| ||||| |||||| || ||||| | | || ||||||||||||||||||| Sbjct 561 GTCATTTGGGTCGTTTCCAGGAACAG-TCCCT-GACCTTCGCCTATCACACAACCAGCTC 618 Query 636 TCTGGTACTATACC-AAAGTCACTAGGCAATCC-CGACTTTTACCGCATCGATTTATCTC 693 || ||| | ||||| ||| ||||||||||| || ||||||| |||| |||||||| || | Sbjct 619 TCCGGTCCGATACCCAAA-TCACTAGGCAA-CCTCGACTTTAACCGGATCGATTTCTCCC 676 Query 694 GGAACAAGCTTC-AAGGCGATGCTTCAATCTTGTTTGGAGCTaaaaaaaCAACATGGATC 752 |||||||||| | |||| |||||||| || |||||||| || || ||||| |||||| || Sbjct 677 GGAACAAGCT-CGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGG-TC 734 Query 753 G-TTGATATATCAAGAAACATGTTCCAG-TTCGATCTCTCCAAGGTTAAGCTCGCTAAGA 810 ||||| ||||||||||||||||| || |||||| |||| |||||| || || ||||| Sbjct 735 CATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGG 793 Query 811 CACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAGTATTCCGGCTGAGTGGA 870 ||||| || ||||||| | || |||||||| |||||||||| ||| |||| | |||||| Sbjct 794 CACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGA 853 Query 871 --GCAAAGCTTATTTTCAGTTACTG-AATGTTAGCTATAACAGACTGTGTGGACGCATCC 927 | ||| || | |||| || || ||||||||||| || | | ||||||||| |||| Sbjct 854 CTG-AAA-CTCCTCTTCAATT-CTTCAATGTTAGCTACAATAAATTGTGTGGACATATCC 910 Query 928 CCAA-AGGAGAGTATA-TTCAAAGATTTGATTCTTATTCCTTTTTCCACAACAAGTGTTT 985 | || ||||| | | | |||| | ||||||||||||||||| |||||| ||||||||||| Sbjct 911 C-AACAGGAGGGAA-ACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTT 968 Query 986 ATGTGGTGCACCTCTTCCTAGTTGCAAGTGAA 1017 |||||||| |||||| | ||||||||||| Sbjct 969 GTGTGGTGCTCCTCTTGAAATTTGCAAGTGAA 1000 > Ahg950055 jgi|Araly1|950055|scaffold_801942.1 Length=622 Score = 416 bits (225), Expect = 2e-115 Identities = 243/252 (96%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 167 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACTGT 226 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 371 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACCGT 430 Query 227 CAACCACCGTGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGGTCAGATCCCCCC 286 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 431 CAACCACCGCGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGTTCAGATCCCAGC 490 Query 287 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 550 Query 347 TGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGACTAAGCTG 406 |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 551 TGGTCAGATCCAACCCACTATTGCCAAGCTCAAGAATCTCACTTTTCTCAGACTAAGCTG 610 Query 407 GACCAATCTCAC 418 ||| |||||||| Sbjct 611 GACGAATCTCAC 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43498248297 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5