BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06980.4
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487518 jgi|Araly1|487518|fgenesh2_kg.6__652__AT5G06980.1 1360 0.0
> Ahg487518 jgi|Araly1|487518|fgenesh2_kg.6__652__AT5G06980.1
Length=1206
Score = 1360 bits (736), Expect = 0.0
Identities = 823/863 (95%), Gaps = 13/863 (2%)
Strand=Plus/Plus
Query 70 AGCCACTAACTAAAGTTCAAACTCACGCGctctccacttcctctcttcaacttgcttctt 129
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AGCCACTAACTAAAGTTCAAACTCACGCGCTCTCCACTTCCTCTCTCCAACTTGCTTCTT 60
Query 130 tgtcttctctctctttcctccttcGCACTCACAAATCTACAGAAGATAGAAGAAGATAGA 189
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 61 TGTCTTCTCTCTCTCTCCTCCTTCGCACTCACAAATCTAC---AGA-AGAAGAAGATAGA 116
Query 190 CTCATAATCTTTTGGATTTGGATTTAGATCTGATCATAAAGGTTAAAGTATCATTCATGG 249
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 117 CTCATAATCTTTTGGATTTGGATTTAGATCTGATCTTAAAGGTTAAAGTATCATTCATGG 176
Query 250 ATCGTTATTCGAGGAGGAATTTAGAGGATCTTGTTGTGCCTAACTATCAAGAGACATCAG 309
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 177 ATCGTTATTCGAGGAGGAATTTAGAGGATCTTGTTGTGCCCAACTATCAAGAGACATCAG 236
Query 310 ATTCGTACCCTTCTCCTGATATGTGGGGTACTGGATGGAGCATGAACTCTTCAGAAGCTG 369
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTCATACCCTTCTCCTGATATGTGGGGTACTGGATGGAGCATGAACTCTTCAGAAGCTG 296
Query 370 CTGAGAAATGTTTTGATTATGATGTGATTCACAATGGTTTCAGTGGAGGATTATACAGTC 429
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CTGAGAAATGTTTTGATTATGATGTCATTCACAATGGTTTCAGTGGAGGATTATACAGTC 356
Query 430 AGATGGAGATGGATATGGGAACTAGTGAACAAGTAGAAGAAGAAACTAAGAAGTTAAAGG 489
||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 AGATGCAGATGGAGATGGGAACTAGTGAACAAGTAGAAGAAGAAACTAAGAGGTTAAAGG 416
Query 490 CTAGTGGTTGTTTTGACCGTTCGCTTCATGATTTTGATGAAATCCAACACATGGATGACA 549
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 417 CTAGTGGTTGTTTTGACCGTTCGCTTCATGACTTTGATGAAATCCAACAGATGGATGACA 476
Query 550 TGTTCTT---TTCCATTTTGGAGGATGTTCCAGGGAATGAGAATTTTCTTTCTTTCAAGG 606
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTTCTTAAGTTCCATTTTGGAGGATGTTCCAGGGAATGAGAATTTTCTTTCTTTCAAGG 536
Query 607 AGTCGGATAATAACAACAGCTCCAGTTC--C-TC--C-TATCTCGACACAACTGATGGCA 660
||||||||| ||||||||||||| |||| | || | ||||||||||| || |||||||
Sbjct 537 AGTCGGATACTAACAACAGCTCCGGTTCTTCCTCTGCGTATCTCGACACTACCGATGGCA 596
Query 661 GGGAAGTCCCTTTGTTCCATTACAACTGGGAAACTTGTCAAGATATGCCACTTATGGAGG 720
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 597 GGGAAGTCCCTATGTTCCATTACAACTGGGAAACTTGTCAAGACATGCCACTTATGGAGG 656
Query 721 AGGATGCACCTATGAATCTGTGTGAGGAGAACAAGGAGGAGGCATCTGCTGAAGAAGTTG 780
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 657 AGGACGCACCTATGAATCTGTGTGAGGAGAACATGGAGGAGGCATCTGCTGAAGAAGTGG 716
Query 781 TGTTGCAGGATCTACAAAGGGCTACAGAAATGTTGACTGATGATACCCGCAAGTGCTTCC 840
||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 717 TGTTGCAGGATTTACAAAGGGCTACAGAAATGTTGACTGATGATGCCCGCAAATGCTTCC 776
Query 841 GCGATACCTTTTACCGGCTTGCAAAGAACTCACAACAGAAGTCAGACTCCAACTCGGATG 900
|||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 777 GCGATACCTTTTACCGACTCGCAAAGAACTCACAACAGAAGTCAGACTCCAACCCGGACG 836
Query 901 AGTTCCTTGAGGATAGAACCAGT 923
|||||||||||||||||||||||
Sbjct 837 AGTTCCTTGAGGATAGAACCAGT 859
Score = 344 bits (186), Expect = 9e-94
Identities = 307/359 (86%), Gaps = 34/359 (9%)
Strand=Plus/Plus
Query 958 CAGTAGGGAAACTGAATTTGAAACCAAACTCAATCGACAGAGCCGTGGCCAATCTCACAT 1017
||||||||||| |||| | |||||| ||||| ||||||||||| || |||||||||||||
Sbjct 856 CAGTAGGGAAAGTGAACTGGAAACC-AACTCCATCGACAGAGCTGTCGCCAATCTCACAT 914
Query 1018 TCAACAAGATGGAATCCAACATGAGAAATATGCCTCCACCGAAGAGACTTTCTTCTGTTC 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 915 TCAACAAGATGGAATCCAACATGAGAAATATGCCTCCACCAAAGAGACTTTCTTCTGTTC 974
Query 1078 AAGGATAAGAGAGTTTCATCATATTTGGTAATACCatatgtgtatataatatatatgtgt 1137
|||||||| | | || ||||| | ||| ||||||| ||||
Sbjct 975 AAGGATAAT-G--T---AT-ATATT----A-TAC-ATATGTGC-------------GTGT 1008
Query 1138 gtgtgtatgtgtgCTTGGCTTGACTTTTTCCAAGCTTCAGTTTTGATCTGTTTCATTAGA 1197
|| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1009 GT----ATCTGTGCTTGGCTTGACTTTT-CCAAGCTTCAGTTTTGATCTGTTTCGTTAGA 1063
Query 1198 CTCTGACTCT-GCTTCTGGATTTCCAATTTCTTATGCTATATGTTATTTACCGAGTGAA- 1255
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1064 GTCTGACTCTCGCTTCTGGATTTCCAATTTCTTATGCTATATGTTATTTACTGAGGGAAA 1123
Query 1256 CCTGTGAATGTACATTACCCCATGTAGAATCTGTTGTTTCAATGTATCAAAAAAGATAT 1314
||| |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1124 CCTATGAAAGTACATTACCCCATGTAGAATCTGTTGTTACAATGTATCAAAAGAGATAT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5