BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07010.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487521 jgi|Araly1|487521|fgenesh2_kg.6__655__AT5G07010.1 1748 0.0
> Ahg487521 jgi|Araly1|487521|fgenesh2_kg.6__655__AT5G07010.1
Length=1302
Score = 1748 bits (946), Expect = 0.0
Identities = 1220/1345 (91%), Gaps = 48/1345 (4%)
Strand=Plus/Plus
Query 68 ATGGCTACCTCAAGCATGAAGAGCATTCCAATGGCGATCCCAAGTTTCTCCATGTGTCAC 127
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCTCAAGCATGAAGAGCATTCCAATGGCGATCCCAAGTTTCTCCATGTGTCAC 60
Query 128 AAGCTCGAGCTCCTTAAAGAAGGCAAAACTCGCGACGTCCCGAAAGCCGAAGAAGATGAA 187
|||||||||||||| || |||||||||| || | | || || ||||| ||||
Sbjct 61 AAGCTCGAGCTCCTCAAGGAAGGCAAAA---GCAAAG-GCC--AA---GAAGATCATGAG 111
Query 188 GGGCTAAGCTGCGAGTTCCAAGAGATGTTGGATTCTCTTCCTAAGGAGAGAGGATGGAGA 247
|||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 112 GGGCTAAGCTACGAGTTCCAAGAGATGTTGGACTCTCTTCCTAAGGAGAGAGGTTGGAGA 171
Query 248 ACTCGTTACCTTTACCTATTCCAAGGGTTTTGGTGCCAAGCCAAAGAGATTCAAGCCATC 307
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 172 ACTCGTTACCTTTATCTATTCCAAGGGTTTTGGTGCCAAGCTAAGGAGATTCAAGCTATC 231
Query 308 ATGTCTTTCCAAAAACATTTCCAATCCC-TCGAAAACGACGTCGTTCTCGCCACCATACC 366
||||||||||||||||||||||| |||| || |||||||||||| |||||||| |||||
Sbjct 232 ATGTCTTTCCAAAAACATTTCCAGTCCCTTC-CAAACGACGTCGTCCTCGCCACTATACC 290
Query 367 TAAATCCGGTACAACCTGGCTAAAAGCTTTAACTTTCACCATCCTTAACCGTCACCGGTT 426
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 TAAATCTGGTACAACCTGGTTAAAAGCTTTAACTTTCACTATCCTTAACCGTCACCGGTT 350
Query 427 TGATCCGGTTGCCTCGAGTACCAACCACCCTCTTTTCACTTCCAACCCTCATGACCTTGT 486
|||||||||| ||| ||| || ||||||||||| |||| ||||||||||||||||| ||
Sbjct 351 TGATCCGGTTTCCTTAAGTTCCGACCACCCTCTTCTCACATCCAACCCTCATGACCTCGT 410
Query 487 ACCTTTCTTCGAGTACAAGCTTTACGCCAACGGAGATGTTCCCGATCTCTCGGGTCTAGC 546
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 411 ACCTTTCTTCGAGTACAAGCTTTACGCCAACGGAGATGTTCCCAATCTCTCGAGTCTAGC 470
Query 547 CAGTCCAAGAACGTTCGCAACCCACTTACCGTTCGGTTCCCTAAAGGAAACGATCGAGAA 606
|||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||
Sbjct 471 CAGTCCAAGAACATTCGCAACCCACATACCGTTCGGTTCCCTTATGGATTCGATCGAGAA 530
Query 607 ACCCGGTGTGAAGGTCGTGTACTTGTGCCGGAACCCGTTTGACACATTCATCTCTTCGTG 666
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 531 ACCCGGTGTGAAGGTCGTGTACTTATGCCGGAACCCGTTTGACACATTCATCTCCTCGTG 590
Query 667 GCATTACACCAACAACATCAAATCCGAGTCAGTGAGCCCAGTCTTGCTAGACCAAGCTTT 726
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 GCATTACATCAACAACATCAAATCCGAGTCAGTGAGCCCAGTCTTGCTAGACGAAGCTTT 650
Query 727 TGATCTGTATTGCCGGGGAGTGATCGGGTTTGGCCCGTTTTGGGAACACATGTTGGGATA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TGATCTGTATTGCCGGGGAGTGATCGGGTTTGGCCCGTTTTGGGAACACATGTTGGGATA 710
Query 787 CTGGAGAGAGAGCTTGAAGAGACCAGAGAAAGTCTTCTTTTTAAGGTACGAGGATCTCAA 846
||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 711 CTGGAGAGAGAGCTTGAAGAGGCCAGAGAAAGTCTTATTTTTAAAGTACGAGGATCTCAA 770
Query 847 AGACGACATCGAGACCAACTTGAAGAGGCTTGCAACTTTCTTAG-AGCTTCCTTTCACCG 905
||| ||||| || ||||||||||||| |||| ||| |||||||| | |||||||||||||
Sbjct 771 AGAAGACATTGAAACCAACTTGAAGAAGCTTTCAAGTTTCTTAGGA-CTTCCTTTCACCG 829
Query 906 AAGAAGAGGAACGAAAGGGAGTTGTGAAGGCTATCGCCGAGCTGTGTAGCTTCGAGAATC 965
|||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 830 AAGAAGAGGAGCGAAAGGGAGTTGTGAAGGCTATTGCTGATCTGTGTAGCTTCGAGAATC 889
Query 966 TGAAGAAGTTGGAGGTGAACAAGTCAAACAAGTCGATCAAGAACTTTGAGAATCGATTCT 1025
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 890 TGAAGAAGTTGGAGGTGAACAAGTCAAACAAATCCATCAAAAACTTTGAGAATCGATTCT 949
Query 1026 TGTTTCGGAAAGGAGAAGTGAGTGATTGGGTTAACTATTTGTCACCTTCACAAGTGGAAA 1085
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 950 TGTTTAGGAAAGGAGAAGTGAGTGATTGGGTTAACTATTTGTCGCCTTCACAAGTGGAAA 1009
Query 1086 GATTGTCAGCCTTAGTGGATGACAAGTTAGGTGGATCTGGTCTCACTTTCAGGTTGAGCT 1145
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1010 GATTGTCAGCCTTAGTGGATGACAAGTTTGGTGGATCTGGTCTCACTTTCAGGTTGAGCT 1069
Query 1146 AAA-TATAAGGCCACGTGCCCCCATTTCTACTCTTGTTCTGAGGGCCTACTATATACGTT 1204
||| ||||||||||||||||| |||||||||||||||| |||| ||||| | | |
Sbjct 1070 AAAATATAAGGCCACGTGCCCACATTTCTACTCTTGTTTTGAGAGCCTA--A-A---G-- 1121
Query 1205 AAGCTAAGTTAAGGCAGTTGTATTGTTGTTACAGATAGACA-TCGAAGCAACGTAACGTC 1263
|| | ||| | | |||||||||||||||||||| | ||||||||||||||||
Sbjct 1122 --GC-A-GTT--G----T---ATTGTTGTTACAGATAGACAAT-GAAGCAACGTAACGTC 1167
Query 1264 CATAattaagttaatttgtcgtttttatttttgtcaacaccgaagtttgtcgaattttta 1323
|| ||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||| ||
Sbjct 1168 CACAATTAAGGTAATTTGTCGTTTCTATTTTTGTCAACATCGAAGTTTGTCGAGTTTCTA 1227
Query 1324 ttttattaaatatcgcttgtttttgc-agttatgtttttatttttaCTAGAGTATTATTG 1382
||||||||||||||| |||| ||||| | ||||||| | |||| ||||| | |
Sbjct 1228 TTTTATTAAATATCGTTTGTGTTTGCCA-TTATGTTCT-ATTTGTACTA---TC-----G 1277
Query 1383 TTCATGTGTGAAGCTAAATGTATTG 1407
|||||||||| ||||||||||||||
Sbjct 1278 TTCATGTGTGTAGCTAAATGTATTG 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5