BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07020.1 Length=1009 Score E Sequences producing significant alignments: (Bits) Value Ahg487522 jgi|Araly1|487522|fgenesh2_kg.6__656__AT5G07020.1 1336 0.0 > Ahg487522 jgi|Araly1|487522|fgenesh2_kg.6__656__AT5G07020.1 Length=967 Score = 1336 bits (723), Expect = 0.0 Identities = 883/959 (92%), Gaps = 15/959 (2%) Strand=Plus/Plus Query 1 GTTACACGCGTAGGCTAGTGGAAAAGCCCACcacacataacacac-acac-atcttcttc 58 |||||||||||||||||||| |||||||||||||||| | | | | | | |||| || Sbjct 1 GTTACACGCGTAGGCTAGTGAAAAAGCCCACCACACACATC-TTCTTC-CGA-CTTCCTC 57 Query 59 ctctc-tttatcttcttcttctctgt-t-tctctAAGAAGATAGAACAATCCCAAGATTC 115 | ||| |||||||||||| || ||| | | |||||||||||||||||| ||||||| || Sbjct 58 CCCTCTTTTATCTTCTTCGCCT-TGTCTGT-TCTAAGAAGATAGAACAAACCCAAGAATC 115 Query 116 TCCTCTTATTTGATCAACCATGTCGAATGTCTTGCTATCCCCAAACGGCTACGTATTTGC 175 || || || |||| |||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 116 TCGTCGAATCTGATAAACCATGTCGAACGTCTTGCTATCCCCAAACGGCTGCGTTTTTGC 175 Query 176 ATCGCCTAAACCTCTTGGCAGATTCATCAATTCAAAGTCCGGCGGACGGAAACTTTTCTT 235 |||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || | Sbjct 176 ATCGCCCAAACCTCTTGGCAGATTCCTGAATTCAAAGTCCGGCGGACGGAAACTTGTCGT 235 Query 236 CTCCGTCGTTAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 CTCCGTCGTCAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295 Query 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTAGCTGGAGAGAAGACGAAAGTGGTGGG 355 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTGGCTGGAGAGAAGACGAAAGTGGTGGG 355 Query 356 AACATTTCCTCCTCGGAAGCCGCGTGGTTGGACTGGCTATGTTGAGAAAGATACTGCTGG 415 ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 356 AACGTTTCCTCCTCGGAGGCCGCGTGGCTGGACTGGCTATGTTGAGAAAGATACTGCCGG 415 Query 416 TCAGACTAATGTTTACTCCATTGAGCCTGCAGTATATGTTGCAGAGAGCGCGATTAGCTC 475 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 416 TCAGACTAATGTTTACTCTATTGAGCCTGCAGTATATGTTGCAGAGAGCGCAATCAGCTC 475 Query 476 AGGTACTGCAGGATCATCGGCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 476 AGGTACTGCAGGATCATCTTCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535 Query 536 TGCTCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTCGGGAAAGATGCCCC 595 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 536 TGCCCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTTGGGAAAGATGCACC 595 Query 596 AACTCGACCCAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GACTCGACCAAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655 Query 656 CAAGCCTTCTGAAATTGTTCAACCTTCTACCCCCTCCGTCACAGAAGCCCCACCGGTGGC 715 ||||||||| |||||||||||| |||||||||||||| |||||||||| || ||| |||| Sbjct 656 CAAGCCTTCAGAAATTGTTCAAGCTTCTACCCCCTCCATCACAGAAGCTCCGCCGATGGC 715 Query 716 CGAGCTAGAAACTTCACTGCCAGAAACTCCATCGGTGGCTCAGCAAGAAACCTCACTGCC 775 ||||| |||||| ||| | |||||||||||| |||||||||||||||||||||||||||| Sbjct 716 CGAGCAAGAAACCTCAGTCCCAGAAACTCCACCGGTGGCTCAGCAAGAAACCTCACTGCC 775 Query 776 GGAAACTATGGCTAGTGAGGCTCAGCCAGAGGCGTCTTCTGTTCCAACAACAAGTAGTAC 835 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 776 GGAAACTATGGCCAGTGAGGCTCAGCCAGAGGCGTCCTCTGTTCCAACAACAAGTAGTAC 835 Query 836 CTCTTAGG-GGCTTAGCCTAGGATTATATCTTTGTGTAAAAATGAGATGAAGCATATACC 894 |||||||| || |||||||||||||||||||| ||||||| ||||||||||||||| ||| Sbjct 836 CTCTTAGGAGG-TTAGCCTAGGATTATATCTT-GTGTAAAGATGAGATGAAGCATAGACC 893 Query 895 AAG-ATTATGCATTCTGTTAATATTCGGATATACCTATATGTATGTATACACTCTGTCA 952 | | ||||||||||||||||||||||||||||| ||| | |||||||||||||| ||| Sbjct 894 A-GTATTATGCATTCTGTTAATATTCGGATATATCTACCTATATGTATACACTCTATCA 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37512950328 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5