BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07100.1 Length=1159 Score E Sequences producing significant alignments: (Bits) Value Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545 992 0.0 > Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545 Length=948 Score = 992 bits (537), Expect = 0.0 Identities = 609/645 (94%), Gaps = 0/645 (0%) Strand=Plus/Plus Query 316 ACACAACTCCTCCCTTGTTCCTACCATCTATGGTAACTCAGCCTTTACCTCAACTGGATT 375 ||||| ||||||| |||| |||||||||||||||||||||| ||||||| ||||||||| Sbjct 287 ACACATCTCCTCCATTGTCCCTACCATCTATGGTAACTCAGTCTTTACCCCAACTGGATG 346 Query 376 TATTCAAATCCGAAATCATGTCGAGTAACAAAACCTCTGATGACGGCTACAATTGGCGCA 435 ||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 347 TATCCAAATCTGAAATCATGTCAAGGAACAAAACCTCTGATGACGGCTACAATTGGCGCA 406 Query 436 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 466 Query 496 ATCCAAATTGTCTCACAAAGAAGAAAGTAGAGACGTCTCTTGTGAAGGGTCAGATGATTG 555 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | | Sbjct 467 ATCCAAATTGTCTCACAAAGAAGAAAGTGGAGACGTCACTTGTGAAGGGTCAGATCACAG 526 Query 556 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACGAAGCGATCATCTT 615 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 527 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACTAAGAGATCATCTT 586 Query 616 CCACCGCTATAGCAGCACATCAGAACAGCAGTAATGGAGACGGTAAAGACATTGGTGAAG 675 ||||| || |||||| || || ||||||||| ||||||||||||||||||||||||||| Sbjct 587 CCACCACTGCAGCAGCGCAACAAAACAGCAGTCATGGAGACGGTAAAGACATTGGTGAAG 646 Query 676 ATGAAACAGAGGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTGGTGG 735 ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 647 ATGAAGCAGACGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTAGTGG 706 Query 736 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGTC 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 707 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGCC 766 Query 796 AGAAAGTCGTCAAGGGTAATCCAAATCCAAGGAGCTATTACAAGTGCACATTTACAGGAT 855 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 767 AGAAAGTTGTCAAGGGTAATCCCAATCCAAGGAGCTATTACAAGTGCACATTTACTGGAT 826 Query 856 GTTTTGTAAGGAAACACGTTGAAAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 915 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 827 GTTGTGTAAGGAAACACGTTGAGAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 886 Query 916 ACGAAGGAAAACACAAACACCAAATCCCGACCCCAAGAAGAGGTC 960 ||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 887 ACGAAGGAAAACATAAACACCAAATCCCGACTCCAAAAAGAGGTC 931 Score = 359 bits (194), Expect = 3e-98 Identities = 230/248 (93%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 66 ATGGGCTCTTTTGATCGCCAAAGAGCTGTTCCGAAATTCAAAACAGCAACACCGTCACCG 125 ||||||||||| ||||||||||||||||| |||||||||||||||||||| || || ||| Sbjct 1 ATGGGCTCTTTCGATCGCCAAAGAGCTGTCCCGAAATTCAAAACAGCAACTCCATCGCCG 60 Query 126 CTCCCTCTTTCTCCTTCGCCTTACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 185 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCCCTCTCTCTCCTTCGCCATACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 120 Query 186 CTCGACTCTCCTCTTCTCTTCACTTCCTCCAACATTTTGCCGTCTCCTACGACAGGCACA 245 |||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 121 CTCGACTCACCTCTTCTCTTCACTTCCTCTAATATTTTGCCGTCTCCAACGACAGGCACA 180 Query 246 TTTCCAGCGCAATCTCTGAACTATAACAATAACGGTTTGCTCATTGACAAAAATGAAATC 305 ||||| |||||||||||||||| || || |||||||||||||||||| | ||||||||| Sbjct 181 TTTCCGGCGCAATCTCTGAACTGGAAGAACAACGGTTTGCTCATTGACCAGAATGAAATC 240 Query 306 AAATATGA 313 |||||||| Sbjct 241 AAATATGA 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43231387878 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5