BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07460.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487579 jgi|Araly1|487579|fgenesh2_kg.6__713__AT5G07460.1 1303 0.0
> Ahg487579 jgi|Araly1|487579|fgenesh2_kg.6__713__AT5G07460.1
Length=963
Score = 1303 bits (705), Expect = 0.0
Identities = 891/975 (91%), Gaps = 36/975 (4%)
Strand=Plus/Plus
Query 35 TTAGCGATGATTTTTAGGTGTTAATCTCT------GACTAGCTTCTTTATATATATAAAC 88
|||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1 TTAGCGTTGATTTTTAGGTGTTAATCTCTGACACGGACTAGCTTCTTTCTATATATAAAC 60
Query 89 GAGCTTCCCGAGG---TCTCATCATCAA-ACA-AT-ACACTTAACAATGGATTCTTCTCT 142
|| |||| ||||| | |||||| ||| ||| | | ||||||||||||||||||||||
Sbjct 61 GATCTTCACGAGGTTTTATCATCAACAATACACTTAAGACTTAACAATGGATTCTTCTCT 120
Query 143 GAAAACTCAGGAACCTCAAGTAGT-G--------GAAACTTCTCCTTCTCCGGTAGCTCA 193
|||||||||||| ||||||||||| | |||||| |||||||||| |||||||
Sbjct 121 GAAAACTCAGGAGCCTCAAGTAGTAGATACACCTGAAACTACTCCTTCTCCAATAGCTCA 180
Query 194 GGAGCCTCCTCAAGTAGCTGACAAACCTGCGATTGTTCCTTCTCCGATAGCTCAAGAGCC 253
||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GGAGCCTCCTCAAGTGGCTGTCAAACCTGCGGTTGTTCCTTCTCCGATAGCTCAAGAGCC 240
Query 254 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGTTGTTTCTG 313
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGATGTTTCTG 300
Query 314 GGGAGTGGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAGGTCGGTTACAC 373
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GGGAGTTGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAAGTCGGTTACAC 360
Query 374 TCATGGGATCTCTCACAATCCGTCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 433
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGGGGATCTCTCACAATCCATCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 420
Query 434 AGAAGTTGTCAGGGTTCAATATGATCCTAAAGAATGCACTTATGAGACACTTCTTGATTT 493
||||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||| |
Sbjct 421 AGAAGTTGTTAGGGTTCAGTTTGATCCTAAAGAGTGCACTTATGAGACGCTTCTTGATCT 480
Query 494 GTTTTGGTCTAGACATAATCCTACCACCTTGAATCGTCAGGGAGAACTTTTGGGAGCACA 553
|||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 GTTTTGGTCTAGGCATGATCCTACCACCTTGAATCGTCAGGGAAAACTTTTGGGAGCACA 540
Query 554 ATACCGATCAGGTATATATTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 613
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATACCGATCAGGTATATACTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 600
Query 614 AGAGAAAGAGCAGAAAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 673
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGAAAGAGCAGATAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 660
Query 674 ATTCTACAAAGCTGAAGAATACCATCAGCAGTACCTTGTCAAAGGTGGGATGCATGGAAA 733
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 661 ATTCTACAAAGCTGAAGAATACCATCAGCAATACCTCGTCAAAGGCGGGATGCATGGCAA 720
Query 734 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTATGGCTAATCAAAAGC 793
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTACGGCTAATCAAAAAT 780
Query 794 C-TTTGTTCCTCTTCTCCCAAAACAGAGGATTCTCCCAGAGGACCTCTTTACCTGTT-GC 851
| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 781 CATTTGTTGCTCTTCTCCCAAAACAGAGGACTCTCTCAGAGGACCTCTTTACCTGTTTG- 839
Query 852 TTTGTTGGTTtgtgtgtgtgcgtgtgtTTATATGTACTTGTCATCTCATCATACATAATA 911
| ||||||||| |||||||| | | |||||||||||||| ||||| | |||||||
Sbjct 840 TGTGTTGGTTTATGTGTGTG--T-TA---ATATGTACTTGTCAGCTCAT-A--CATAATA 890
Query 912 AAAGATGTGGGATCATCTCACCTTTGTGAAA-TTCTTTTCGTTACTCCAAATTCAACTAA 970
||||||||||||||||||||||||||| ||| |||| || |||| || ||||||||||||
Sbjct 891 AAAGATGTGGGATCATCTCACCTTTGT-AAACTTCTCTTAGTTAGTC-AAATTCAACTAA 948
Query 971 TAAATATTTGAATAA 985
|||||||||||||||
Sbjct 949 TAAATATTTGAATAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5