BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07690.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487604 jgi|Araly1|487604|fgenesh2_kg.6__738__AT5G07690.1 1857 0.0
Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698 425 4e-118
Ahg950898 jgi|Araly1|950898|scaffold_802785.1 420 2e-116
> Ahg487604 jgi|Araly1|487604|fgenesh2_kg.6__738__AT5G07690.1
Length=1417
Score = 1857 bits (1005), Expect = 0.0
Identities = 1147/1214 (94%), Gaps = 16/1214 (1%)
Strand=Plus/Plus
Query 327 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGACT-GCCGA 385
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 211 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGCTGAAGAAAGGAGCATGGA-TCGCCGA 269
Query 386 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 329
Query 446 TCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 389
Query 506 TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCAT 565
|||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 390 TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTTACGAGGAGGAACAGATTATCATCAT 449
Query 566 GCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 625
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 509
Query 626 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCTCCTGATCGATAAGGG 685
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 510 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATAAGGG 569
Query 686 AATCGATCCCGTGACCCACAAGCCACTTGCCTATGACTCAAACCCGGATGAGCAATCGCA 745
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 570 AATCGATCCCGTGGCCCACAAGCCACTTGCCTATGATTCAAACCCGGAAGAGCAATCGCA 629
Query 746 ATCGG-G--TTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGCTCCAAAAATGTACCGGA 802
||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||| |||
Sbjct 630 ATCGGCGGGTTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGTTCCTACAATGTACAGGA 689
Query 803 GATAACCAGCAGTGACGAGACACCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 862
||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 690 GATAAGCAGCAGTGATGAGACAGCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 749
Query 863 TTTTAAGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTTGCAGCTAGGGCTTCTTC 922
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 750 TTTTATGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTGGCAGCTAGGGCTGCTTC 809
Query 923 CATGGGAACTATACT-AGGC-GCCTCCATCGAAGGAACCTTGATCAGCTCTACACCGTTG 980
||| |||| ||| || || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 810 CATAGGAAATAT-CTTAG-CAGCCTCCATCCAAGGAACCTTGATCAGCTCTACACCGTTG 867
Query 981 TCTTCATGTCTAAATGATGACTTTTCTGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 1040
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 868 TCTTCATGTCTCAATGATGACTTTTCCGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 927
Query 1041 CCATTCTATCAGTCATCTGAACACATAATTGATCATATGAAAGAAGATATCAGCATCAAC 1100
| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 928 CAATTCTGTCAGTCATCTGAACACATAATTGATCATATGAAAGAAGACATCAGCATCAAC 987
Query 1101 AATTCCGAATACGATTTCTCGCAGTTTCTCGAGCAGTTTAGTAACAACGAAGGGGAAGAA 1160
||||||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 988 AATTCCGAATATGATTTCTCGCAGTTTCTTGAGCAGTTTAGTAAAAATGAAGGCGAAGAA 1047
Query 1161 GCTGACAATACTGGAGGAGGATATAACCAAGATCTTCTTATGTCTGATGTCTCATCAACA 1220
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1048 GCTGACAATATTGGGGGAGGATATAACCAAGATCTGCTTATGTCTGATGTCTCATCAACA 1107
Query 1221 AGCGTTGATGAAGACGAGATGATGCAA-AACATAACTGGTTGGTCAAATTATCTCCTTGA 1279
||||||||||||||||| |||||| || |||||||| |||||||| |||||||||||||
Sbjct 1108 AGCGTTGATGAAGACGATATGATG-AAGAACATAACCAGTTGGTCACATTATCTCCTTGA 1166
Query 1280 CCATTCCGATTTCAATTATGACACGAGCCAAGATTACGACGACAAGAACTTCATATGATC 1339
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1167 CCATTCCGATTTTAATTATGACACGAACCAAGATTACGACGACAAGAACTTCATATGATC 1226
Query 1340 CGTTGATTGCTTACCGGACTAGAGTTGACCGGTTAATGTCATATGGTTCTCTTAGATATT 1399
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1227 CGTTGATTGGTTACCGGACTAGAGTTGACCGGTTCATGTCAT--GGTTCTCTTAGATATT 1284
Query 1400 TGTCAAGTTATAGTAAAGGTCCACTATAGGGTCACTATATATTAATATTCAGTAATGGAT 1459
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1285 TGTCAAGTTATAGTAAAGGTCCATTATAGGGTCACTATATATTAATATTCAATAATGGAT 1344
Query 1460 TCTCTTAGTTAGAGAACCTTGTG--ATGCCGTGGATCAATTAGTATTTGATTTGCGGGAG 1517
||||||||||||||| |||| || ||||| ||||||||||||||||||||| |||||||
Sbjct 1345 TCTCTTAGTTAGAGA-CCTTATGGGATGCCATGGATCAATTAGTATTTGATTCGCGGGAG 1403
Query 1518 ACACGAGttttttt 1531
||||||||||||||
Sbjct 1404 ACACGAGTTTTTTT 1417
Score = 161 bits (87), Expect = 1e-38
Identities = 114/126 (90%), Gaps = 6/126 (5%)
Strand=Plus/Plus
Query 109 TTAATATGAAAACACAAAATC-CTA--CAACGGTCGTCTACCACAGTTTCTCAGTCAGTT 165
|||||||||||||||| |||| || |||| | |||||||||||||||||||||||||
Sbjct 65 TTAATATGAAAACACACAATCAATATTCAAC-G--GTCTACCACAGTTTCTCAGTCAGTT 121
Query 166 TCATATTCAGATGCATCAGAGTTCTCATCAAGAGATCTATCAGTCTATTGCCTTAAACTC 225
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||
Sbjct 122 TCATATTCAGATGCATCAGAGTTCTTATCAACAGATCTATCAGTCTCTTGCCTTAAATTC 181
Query 226 GACGAC 231
||||||
Sbjct 182 GACGAC 187
> Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698
Length=1017
Score = 425 bits (230), Expect = 4e-118
Identities = 338/390 (87%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 327 ATGTC-AAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGACTGCCGA 385
||||| |||| | | ||||||| | ||||||||| |||||||||||||||||||| ||
Sbjct 1 ATGTCAAAGAGA-CTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGA 59
Query 386 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 445
||| || ||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 60 AGAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACAT 119
Query 446 TCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 505
||| |||||||||| || ||||| |||||||||||||||||||| || ||| |||||||
Sbjct 120 TCCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTA 179
Query 506 TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCAT 565
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 180 TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCAT 239
Query 566 GCTACACGCTTCTCGCGGCAACAAGTGGTC-AGTCATAGCGAGACATTTGCCCAAAAGAA 624
||| || || ||||| ||||| |||||||| | |||||| ||||||||||| |||||||
Sbjct 240 GCTTCATGCCTCTCGTGGCAATAAGTGGTCCAC-CATAGCAAGACATTTGCCAAAAAGAA 298
Query 625 CAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAA-AAA-GCTCCTGATCGATAA 682
| ||||||||| | |||||||| |||||||| |||||||| ||| | | ||||||||||
Sbjct 299 CGGATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTT--TGATCGATAA 356
Query 683 GGGAATCGATCCCGTGACCCACAAGCCACT 712
|| || ||||||||||| |||||||||||
Sbjct 357 TGGCATTGATCCCGTGACACACAAGCCACT 386
> Ahg950898 jgi|Araly1|950898|scaffold_802785.1
Length=1156
Score = 420 bits (227), Expect = 2e-116
Identities = 346/402 (86%), Gaps = 14/402 (3%)
Strand=Plus/Plus
Query 317 GAAAAACAAGATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGAC-TGAAGAAAGGAGCAT 375
|||||| || |||||||||||||||||||| || |||||||| | |||||||||||||||
Sbjct 16 GAAAAA-AA-ATGTCAAGAAAGCCATGTTGCGTCGGAGAAGG-CTTGAAGAAAGGAGCAT 72
Query 376 GGACTGCCGAAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCT 435
|||| |||| || ||||||||||||||||||||||| || || ||||| || |||||||
Sbjct 73 GGACCACCGAGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCT 132
Query 436 GGCGTGACATTCCCCAAAAAGCTGGAC-TAAAACGATGTGGAAAGAGTTGTAGATTGCGA 494
|||| |||||||||||||||||||| | | || || |||||||||||||||||| |||||
Sbjct 133 GGCGCGACATTCCCCAAAAAGCTGG-CTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGA 191
Query 495 TGGGCTAACTA-TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCT-ATGAGGAGGAAC 552
||| | || || || |||||||| ||||| ||||| |||||||| | | ||||| || |
Sbjct 192 TGGACCAATTACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGC 249
Query 553 AGATTATCATCATGCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATT 612
|||||||||||||||| || |||||||| |||||||||||||| || |||||||||||||
Sbjct 250 AGATTATCATCATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATT 309
Query 613 TGCCCAAAAGAACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGC-TC 671
| || | ||||||||| |||||||| ||||||||||||||||||||||||||||| | |
Sbjct 310 TACCTAGAAGAACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTT 369
Query 672 CTGATCGATA-AGGGAATCGATCCCGTGACCCACAAGCCACT 712
||||||| | |||| | ||||||||||| |||||||||||
Sbjct 370 -TGATCGA-ACAGGGTCTTGATCCCGTGACTCACAAGCCACT 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5