BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07830.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350042 jgi|Araly1|350042|fgenesh1_pg.C_scaffold_6000635 2401 0.0
> Ahg350042 jgi|Araly1|350042|fgenesh1_pg.C_scaffold_6000635
Length=1587
Score = 2401 bits (1300), Expect = 0.0
Identities = 1498/1590 (94%), Gaps = 27/1590 (2%)
Strand=Plus/Plus
Query 268 ATGGCTCAAGAAATGAAACGTGCATCGATCGTTATCCAAGGAGCTCGACGAGTTTGTGAG 327
||||||||||||| ||||||||||||||||||| | ||||||| || ||||| ||||||
Sbjct 1 ATGGCTCAAGAAACGAAACGTGCATCGATCGTTGTGGAAGGAGCCCGTCGAGTCTGTGAG 60
Query 328 ACCGATGAGAACTTTGTCTGTGCGACATTGGACTGGTGGCCTCATGACAAGTGCAACTAT 387
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGACGAGAACTTTGTCTGTGCCACATTGGACTGGTGGCCTCATGACAAGTGCAACTAT 120
Query 388 GACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATTTAACGCGTCCCCTTCTT 447
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATTTAACTCGTCCCCTTCTT 180
Query 448 ACTAAAGCTATTAAAGCTTTCAAGCCGTTGAGGATAAGAATTGGTGGTTCGC-TGCAAGA 506
|||||||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 181 ACTAAAGCTATTCAAGCTTTCAAGCCATTGAGGATAAGAATTGGTGGTTC-CTTGCAAGA 239
Query 507 TCAAGTTATTTACGACGTAGGAAATCTCAAAACTCCTTGCCGTCCATTCCAAAAAATGAA 566
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAAGTAACGTACGACGTAGGAAATCTCAAAACTCCTTGCCGTCCATTCCAAAAAATGAA 299
Query 567 CAGCGGTTTGTTTGGATTCTCTAAAGGATGCTTGCACATGAA-ACGATGGGACGAGCTCA 625
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 300 CAGCGGTTTGTTTGGATTCTCTAAAGGATGCTTGCACATGAAGA-GATGGGACGAGCTCA 358
Query 626 ACAGTTTCCTAACCGCAACCGGAGCGGTAGTGACATTCGGTTTAAACGCTTTGCGTGGGA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 ACAGTTTCCTAACCGCAACCGGAGCGGTAGTGACATTCGGTTTAAACGCTTTGAGTGGGA 418
Query 686 GACACAAACTCCGCGGAAAGGCGTGGGGTGGTGCATGGGATCACATAAACACTCAAGATT 745
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 419 GACACAAACTCCGCGGAAAGGCGTGGGGTGGGGCGTGGGATCACATAAACACTCAAGATT 478
Query 746 TCTTAAACTACACAGTCTCGAAGGGTTACGTTATTGATTCTTGGGAA------------- 792
|| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 479 TCATAAACTATACAGTCTCAAAGGGTTACGTTATTGATTCTTGGGAATTCGGTTTCCTTG 538
Query 793 -T-TC------GGAAACGAGCTGAGTGGAAGCGGAGTTGGTGCGAGCGTGAGCGCAGAGC 844
| || ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 539 TTCTCGGTATAGGAAACGAGCTGAGTGGAAGCGGGGTTGGTGCAAGCGTGAGCGCAGAGC 598
Query 845 TTTACGGGAAAGACTTGATTGTACTTAAAGATGTAATCAACAAAGTTTATAAAAATTCTT 904
|||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 599 TTTATGGGAAAGACTTGATTGTACTGAAAGATGTAATCAACACAGTTTATAAAAATTCTC 658
Query 905 GGTTACACAAGCCTATACTTGTCGCTCCTGGAGGGTTCTATGAACAACAATGGTACACCA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGTTACACAAGCCTATACTTGTCGCTCCTGGAGGGTTCTATGAACAACAATGGTACACCA 718
Query 965 AACTTCTTGAAATTTCCGGTCCTAGTGTTGTCGACGTTGTGACTCATCATATATACAATC 1024
|||||||| | || ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 719 AACTTCTTCACATCTCCGGTCCTGGTGTTGTCGACGTCGTGACTCATCATATATACAATC 778
Query 1025 TTGGTTCAGGAAATGATCCCGCGCTGGTGAAGAAGATAATGGATCCGAGTTATTTAAGCC 1084
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 779 TTGGTTCAGGTAATGATCCTGCGCTTGTGAAGAAGATAATGGATCCGAGTTACTTAAGCC 838
Query 1085 AGGTATCAAAAACATTCAAGGACGTGAACCAGACGATTCAAGAACATGGACCGTGGGCTT 1144
||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 839 AGGTATCAAAAACGTTCAAGGACGTGAATCAGACGATTCAAGAACATGGACGGTGGGCTT 898
Query 1145 CTCCTTGGGTTGGAGAATCTGGTGGAGCTTACAATAGTGGTGGCCGTCATGTTTCTGACA 1204
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 899 CTCCTTGGGTTGGAGAGTCTGGTGGAGCTTACAATAGTGGTGGTCGTCATGTTTCTGATA 958
Query 1205 CATTCATAGATAGCTTCTGGTATCTAGATCAGCTTGGAATGTCAGCGAGACACAACACTA 1264
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 959 CATTCATAGATAGTTTCTGGTATCTAGATCAGCTTGGAATGTCGGCGAGATACAACACTA 1018
Query 1265 AAGTTTACTGCAGACAGACTTTGGTTGGAGGGTTTTACGGCTTGCTCGAAAAGGGAACGT 1324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 AAGTTTACTGCAGACAGACTTTGGTTGGAGGGTTTTACGGCTTGCTCGAAAAGGGAACAT 1078
Query 1325 TTGTTCCAAATCCTGATTACTATAGCGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGG 1384
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGTTCCAAATCCTGATTACTATAGTGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGG 1138
Query 1385 TTCTTGCGGTGCAGACAGATGGACCGCCACAGCTACGGGTTTACGCACATTGTTCAAAAG 1444
|||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1139 TTCTTGCGGTTCAAACAGATGGACCGCCACAGCTACGAGTTTATGCACATTGTTCAAAAG 1198
Query 1445 GAAGAGCCGGTGTGACATTGCTACTGATAAATCTAAGCAATCAATCGGATTTTACGGTTA 1504
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1199 GAAGAGCCGGTGTGACATTGCTTCTGATAAATCTAAGCAATCAATTGGATTTTACGGTTA 1258
Query 1505 GTGTCAGCAATGGCATAAACGTGGTTTTGAATGCGGAATCAAGGAAGAAGAAGTCATTGT 1564
||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||
Sbjct 1259 GTGTCAGCAATGGCATAAAGGTTGTTTTGAATGCGGAATCGAGCAAGAAGAAGTCATTGT 1318
Query 1565 TGGATACTTTAAAAAGACCATTTTCTTGGATTGGAAGCAAAGCTTCTGATGGATATTTGA 1624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 TGGATACTTTAAAAAGACCATTTTCTTGGATTGGAAGCAAAGCTTCGGATGGATATTTGA 1378
Query 1625 ATAGAGAAGAGTATCATCTGACACCAGAAAACGGTGTGTTGC-GCAGCAAAACAATGGTC 1683
| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||
Sbjct 1379 ACAGAGAAGAGTATCATCTGACACCAGAAAACGGTGAGTTGCAG-AGCAAAACAATGATC 1437
Query 1684 TTGAATGGTAAATCGTTAAAACCGACGGCAACAGGAGATATCCCGAGCCTTGAACCGGTC 1743
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1438 TTGAATGGTAAATCGTTAAAACCGACGGTAACAGGAGATATCCCGAGCCTTGAACCGGTC 1497
Query 1744 CTCCGTAGTGTGAACTCTCCGCTTAATGTCTTGCCATTGTCGATGTCGTTCATTGTGTTA 1803
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTCCGTGGTGCGAACTCTCCGCTTAATGTCTTGCCATTGTCGATGTCGTTCATTGTGTTG 1557
Query 1804 CCTAATTTTGATGCTTCTGCTTGTTCATGA 1833
||||||||||||||||||||||||||||||
Sbjct 1558 CCTAATTTTGATGCTTCTGCTTGTTCATGA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5