BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08010.1 Length=1822 Score E Sequences producing significant alignments: (Bits) Value Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1 2584 0.0 Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1 503 2e-141 > Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1 Length=1814 Score = 2584 bits (1399), Expect = 0.0 Identities = 1691/1826 (93%), Gaps = 44/1826 (2%) Strand=Plus/Plus Query 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCAA 60 Query 61 AATGTATCCAAAGGTAAATCTTCTTCTGAAGATTTGACTAATGTGAAGCTAGAGTCACCG 120 |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||| Sbjct 61 AATGTATCAAAAGGTAAACCTTCTTCTGAAGATTTGACTAATGTGAAGCTTGAGTCCCCG 120 Query 121 AGATGCTTGGCTAGTAATGTAGTAAGAGTTAAAAAACCAAAAGAAGAAAACTTTGAGGAT 180 |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 121 AGATACTTGGCTAGTAATGTAGTAAGAGTCAAGAAACCAAAAGAAGAAAACTTTGAGGAT 180 Query 181 TGCTTAAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATGGAGTGGAAGTA 240 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 181 TGCTTTAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATAAAGTGGAAGTA 240 Query 241 GCTTCGAATAATGAGGAGGATTTGGGATATGATGATGAGATTCGTTCAGGTTCTTTTGGG 300 | ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 GATTCGAGTAATGAGGAGAATTTGGGATATAATGATGAGATTCGTTCAGGTTCTTTTGGG 300 Query 301 AACAGAGCGTTTCTTAGGAGAAATCAGTGTCCTATCAAGCCTTTTTCTTTGGAGAAAAGC 360 |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| Sbjct 301 AACAGAGCGTTTCTTAGGAGGAATCAGCGTCTTATCAAGCCTTTTTCTTTGGAGAAAAGC 360 Query 361 ATTATGTCTCGGTTACATAGAGAGAAAATATCCATGGAGGAATATATGCGTAGTCCGTTT 420 | |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| Sbjct 361 GTAATGTCTCGGTTACATAGAGAGAAAGTGTCCATGGAGGAATATATGCGTAGTCTGTTT 420 Query 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAATGTAATT 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAAAGTAATT 480 Query 481 AGCAAGAATACTGGAGATTCTGTTAGCCAGCAAGTTTCGGAATGCGGGATTCCTCAGCTT 540 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 481 AGCAAGAAAACTGGAGATTCTGTTAGCCAGCAAGTTCCGGAATGCGGGATTCCTCAGCTT 540 Query 541 AGGAAGTTGAAATCTTCACTTCTTTACGCTAAAAGGGGAGTTGGAGATGCGAAGAGCGTG 600 ||||||||| |||| |||||||| |||||||| |||||||||||| |||| |||| || Sbjct 541 AGGAAGTTGGAATCCTCACTTCTCTACGCTAAGAGGGGAGTTGGAAATGCTAAGACCGCA 600 Query 601 AGTAGAAGATCTGATAATGGGACTGGATCAAATGATCCAGTGTTAG-TGCTATGCGTTGG 659 |||||| ||||||||||||||| ||||||||||||| ||||||| | |||| |||||||| Sbjct 601 AGTAGAGGATCTGATAATGGGATTGGATCAAATGATGCAGTGTT-GCTGCTTTGCGTTGG 659 Query 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCTAACCAAACCGAACTAAACAAAGTCAG 719 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCAAACCAAACCGAACTAAACAAAGTCAG 719 Query 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGGAAAAGAGTTAGAAGATGA---C------AT 770 ||||||||||||||||||||||||||||| ||||||||| |||||||| | | Sbjct 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGTAAAAGAGTTTGAAGATGAGCTCAAGAGAAA 779 Query 771 ACAC-GA-TG---GTG-AA-A--A---ACAGTGTGATGAAAAGACAGCAGAGAATTCAGA 818 | || | || ||| || | | ||| || |||||||| || |||||||||||| Sbjct 780 AGACTCATTGACAGTGAAAGATGATTTACACAATGGTGAAAAGAGAGTAGAGAATTCAGA 839 Query 819 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 899 Query 879 GATTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGA-TTTCG 937 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 900 GACTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGAGTTT-G 958 Query 938 AAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATCAGGTTGAAAGACAGCGTTTTGATG 997 ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| Sbjct 959 AAGTAGAATTTGCGCAGGGCGAGCTGATAGATGATCAGGTTGAAAGGCAGCGTTTTGATG 1018 Query 998 AAACCGTGTCCAACCAGGAACGGAGTAGCAATTCCACACCTGAATCAGGAAACTACATAG 1057 |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1019 AAACCGAGTCCAACCAGGAATGGAGTAGCAATTCCACACCTGAATCAGGAAACTATATAG 1078 Query 1058 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCATGCTATGAAAAAC 1117 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1079 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCACGTTATGAAAAAC 1138 Query 1118 GGATAAAAGAACTTGAGAATGCCTTACAAGAGAGTCAGAGGAAAGTGGAGCAGCTGGTCA 1177 | |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct 1139 GTATAAAAGAACTTGACAAAGCCTTACAAGAGAGTCAGATGAAAGTGGAGCAGCTGGTCA 1198 Query 1178 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCCATGAAGAGATGA 1237 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1199 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCAATGAAGTGATGA 1258 Query 1238 AATATAAGAGGGGCTCAAATCCTCCAGTTTCTGTAGCTCATATAGAGAAGAAACATAA-- 1295 |||| ||||| | |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct 1259 AATACAAGAGAGACTCAAATCTTCCAGTTTCTGTAGCTCATACCGAGAAGAATCATAATC 1318 Query 1296 -TCCTGCAGAGATCCAACCTCTGGTTATGACTTTAGAAGGGGAAGCACTTGACGCATTCA 1354 ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1319 CTCCTGCAGAGATCCAGCCTCTGGTTATGAATTTAGAAGGGGAAGCACTTGATGCATTCA 1378 Query 1355 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGACGATTTACAAT 1414 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1379 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGATTATTTACAAT 1438 Query 1415 GTGTGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1474 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 GTGAGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1498 Query 1475 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAACTTCAGAGGATGTGAATTTGTCCA 1534 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1499 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAAGTTCAGAGGATGTGAATTTCTCCA 1558 Query 1535 TGCTGCAAGATCTACTTGGTCTGAGCGACgaagaagaagaagaagaagaTGAGATGGAGA 1594 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1559 TGCTGCAAGATCTACTTGGTCTGAGTGACGAAGAAGAAGA---------TGAGATGGAGA 1609 Query 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1610 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGATCGTCTGCTGTGTTAAATG 1669 Query 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAATACAACCAAATCTATAAAAA--GCATTTAC 1712 ||||||| |||||||| ||||||||||||| | ||| ||||||||||||| |||||||| Sbjct 1670 CCCAGAAGATGCTATTTCTCATGGAAGAAACAGAACAAAATCTATAAAAAAAGCATTTAC 1729 Query 1713 TCAAATTCTCATCATTTTTTGATGAAAGTATTACACGTCTCTAGTTAGTGT--GTGTGT- 1769 ||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 1730 TCAAATTCTTATCATTTAT-GATGAAAGTATTACACGTCTCTAGTTAGTGTTTGTGTGTG 1788 Query 1770 -AGATATGCAAAGATTGGTGTAACTT 1794 ||||||||||||||||||||||||| Sbjct 1789 TAGATATGCAAAGATTGGTGTAACTT 1814 > Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1 Length=2394 Score = 503 bits (272), Expect = 2e-141 Identities = 725/930 (78%), Gaps = 86/930 (9%) Strand=Plus/Plus Query 795 TGAAAAGACAGCAGAGAATTCAGAATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGA 854 ||||||| |||| || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1396 TGAAAAGGCAGCTGACAATTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCTGA 1455 Query 855 ACTTGAAAGGCTGGAGATCAACATGATTTCCTCCAACATTGAGACAAAACTCTCAGATGT 914 |||||||||||| || || ||||||| ||||||||||||||||||| |||||| ||| | Sbjct 1456 ACTTGAAAGGCTAGAAATTAACATGAACTCCTCCAACATTGAGACAAGACTCTCTGATAT 1515 Query 915 CTTTGAGCTGGAGCCAGATT-TCGAAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATC 973 | ||| ||||||| |||| | || ||||||||||| |||||||| ||||||| ||||| Sbjct 1516 GATAGAGATGGAGCCGGATTGT-GAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATC 1574 Query 974 AGGTTGAAA--GACAGCGTTTTGATGAAACCGTGTCCAACCAGGAACGGAGTAGCAATTC 1031 |||| ||| || ||||||| |||||||| | ||||||||| || | ||| | || || Sbjct 1575 GGGTT-AAAGGGA-AGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTC 1632 Query 1032 CACACCTGAATCAGGAAACTA--CATAGTCTCACCTCGTGAGTTAAGCTTGC-GTCTGCT 1088 ||||||||| ||||||||||| | | ||||||||||| || || ||||||| || ||| Sbjct 1633 CACACCTGAGTCAGGAAACTATGC-T-GTCTCACCTCGCGAATTGAGCTTGCGGT-TGCA 1689 Query 1089 TGGAGTTATCAATTCATG-CTATGAAAAACGGATAAAAGAACTTGAGAATGC-CTTACAA 1146 | ||||||||||||| | || ||| |||||||| |||| || |||| ||| | | ||| Sbjct 1690 TAAAGTTATCAATTCACGCCT-TGAGAAACGGATTGAAGAGCTCGAGACTGCAC-TCCAA 1747 Query 1147 GAGAGTCAGAGGAAA-GTGGAGCAGCTGGTCATAGAATCAGAGGA-AAAGAAGAAACCAT 1204 ||||| || | |||| ||||||||||||||||| |||||||| || ||||||| ||| Sbjct 1748 GAGAGCCA-AAGAAAGGTGGAGCAGCTGGTCATGGAATCAGA-GAGCAAGAAGAGGTCAT 1805 Query 1205 TGTCAAGGATT-TGGGAAACCCATGAAGAGATGAAATATAAGAGGGGCTC-AA-ATCCTC 1261 ||||||| || |||||||| | ||||| ||||| ||||||||| | ||| || || | | Sbjct 1806 GGTCAAGG-TTATGGGAAACTCGTGAAGTGATGACATATAAGAGTGACTCGAATAT-C-C 1862 Query 1262 CAGTTTCTGTAGCTCATATAGAGAAGAAACATAATCCTGCAGAGATCCAACCTCTGGTTA 1321 ||||| || | | | | | ||| || ||||||||| ||||| ||||| ||||||| Sbjct 1863 CAGTTGCTATTGAGC--ACA-CCAAG--AC-TAATCCTGCTGAGATGCAACCGCTGGTTA 1916 Query 1322 TG-ACTTTAGA-AGGGGAAGCACTTGACGCATTCAATGAATCTTACGAGGAACTGATGGA 1379 || || ||| | |||||||||||||| ||||||||||| |||||||| ||| ||||| | Sbjct 1917 TGAAC-TTA-ACTGGGGAAGCACTTGATGCATTCAATGAGTCTTACGACGAATTGATGAA 1974 Query 1380 TATTAACGACT-ATTCAGAAGA--A-GACGAT--T--TACAATG-T-GTGATGC-AG-GA 1427 || ||||| | | || ||||| | || ||| | | || | | | ||||| || || Sbjct 1975 AATAAACGA-TGACTCGGAAGATGATGATGATGGTGATTCACCGTTAGAGATGCAAGAGA 2033 Query 1428 GAATGA-GCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTTGGAGCCATAAAG 1486 | | || | |||||||| || |||| || | |||||||||||||||||||||| || Sbjct 2034 GCAGGATTCACCAAGAAGATTTCTCTTCAACAAACAAAAGCTCACCTTGGAGCCAT-CAG 2092 Query 1487 ATTACATAAAGGATTCTTCAAGAACTTC-AGAGGATGTGAATTTGTCCATGCTGCAAGAT 1545 | | | || | |||||| | | |||| | | ||| | |||| ||| Sbjct 2093 ---A-A-GGACGA-T-TTCAAG--GTGCAAGAGCA-G-GAA------C-TGCT---AGAC 2131 Query 1546 C-TACTTGGT-CTGAGCGACgaagaagaag-aag-aa-ga-----aga-TGAGATGGAGA 1594 | || ||||| ||| ||||||||||||| ||| || || ||| ||| ||| ||| Sbjct 2132 CTTA-TTGGTATTGA-AGACGAAGAAGAAGAAAGCAATGACTTTGAGAGTGAAATGCAGA 2189 Query 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654 |||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||| |||| Sbjct 2190 AGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTTGAATG 2249 Query 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAA 1684 | ||||| |||||||| ||||||||||||| Sbjct 2250 CTCAGAAGATGCTATTTCTCATGGAAGAAA 2279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68410080020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5