BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08020.1 Length=1815 Score E Sequences producing significant alignments: (Bits) Value Ahg325405 jgi|Araly1|325405|fgenesh1_pm.C_scaffold_6000625 2942 0.0 Ahg940266 jgi|Araly1|940266|scaffold_600810.1 859 0.0 Ahg892827 jgi|Araly1|892827|Al_scaffold_0006_823 326 5e-88 > Ahg325405 jgi|Araly1|325405|fgenesh1_pm.C_scaffold_6000625 Length=1815 Score = 2942 bits (1593), Expect = 0.0 Identities = 1743/1817 (96%), Gaps = 4/1817 (0%) Strand=Plus/Plus Query 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTATTAGCCAATCAATCCCTTGAT 60 |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTTTTATCGAATCAATCCCTTGAT 60 Query 61 TCCTCCTCTGTTAGACCCGAAATTGTTGTTCAAGTCGTGGATCTTAAGCCTGCT-GGAAA 119 || ||||||||| ||||||| || |||||||||||||||||||||||||||| | ||||| Sbjct 61 TCTTCCTCTGTTCGACCCGATATCGTTGTTCAAGTCGTGGATCTTAAGCCTG-TCGGAAA 119 Query 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATTAAAGCAATGTTACCAGCGAC 179 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATGAAAGCAATGCTACCAGCGAC 179 Query 180 TTTGACTTCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTTATTCGTCTCCTTGA 239 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 TTTGACATCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTGATTCGTCTCCTTGA 239 Query 240 GTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299 Query 300 TGAGGCTGTTGCTTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGAGGCCGTTGCCTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359 Query 360 CATAATGTTGAAACCCAAGCATGAGTTTGTTGCCAAATCAGCTTCACAGATTATCAATGA 419 ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 360 CATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGATAATCAATGA 419 Query 420 GCAAAGGGGAAATGCTGCACCTGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 GCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479 Query 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACTAACAAAGG 539 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACAAACAAAGG 539 Query 540 AGTCATGAGAACTTACAAAAATGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 540 AGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599 Query 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659 Query 660 TGACAGATTCGAGATGGGAAAGGTGTACTATATATCCAGGGGATCACTTAAGCTTGCTAA 719 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 660 TGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTAAGCTTGCTAA 719 Query 720 TAAGCAGTTCAAGACGGTTCAGAACGATTATGAGATGACCCTAAATGAGAATTCTGAGGT 779 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 720 TAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGAATTCTGAGGT 779 Query 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACCCCTGAAACTAAATTCAACTTTGTACCCAT 839 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACTCCTGAAATTAAATTCAACTTTGTACCCAT 839 Query 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899 Query 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAG 959 |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAATGACAATGAAATGATCCCAAAGAG 959 Query 960 AGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCT 1019 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | Sbjct 960 GGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCCTTTGGAATGATTT 1019 Query 1020 AGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCACCCTGTTATCGCGAT 1079 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1020 GGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAATCACCCTGTTATCGCGAT 1079 Query 1080 TAAATCTCTTAAAGTTGGAGCTTTTCAAGGTGTTTCATTGTCTACTATCAGCAGAAGCAA 1139 ||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1080 TAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAACTATCAGCAGAAGCAA 1139 Query 1140 TGTGGTGATAAACCCTAATTCTCCAGAAGCTACA-AAGTTGAAATCTTGGTATGATGCTG 1198 |||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1140 TGTGGTGATAAATCCTGATTCTCCAGAAGCTA-AGAAGTTGAAATCTTGGTATGATGCTG 1198 Query 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACG 1258 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTCTTCTGCCAACAATG 1258 Query 1259 GATCAAGATCCATGTATTCTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTT 1318 |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 1259 GATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTT 1318 Query 1319 TAGGCGAGGAGAAGCCTGTATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAG 1378 |||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 1319 TAGGCGAGGAAAAGCCTGTATTCTTTAGTATTAGAGCTTACATAAGCTTCATCAAGCCAG 1378 Query 1379 ACCAAACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGG 1438 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1379 ACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAGGCAATGG 1438 Query 1439 ACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATA 1498 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1439 ACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAATGCAGTTTAAGGTATA 1498 Query 1499 TAATGGCGGTGAAAGTCTCCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATG 1558 ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| Sbjct 1499 TAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATG 1558 Query 1559 AAGCAGAGAAGATTATCGGCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAG 1618 |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1559 AAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAG 1618 Query 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCC 1678 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGGTCATCTCATCTCTTCA 1678 Query 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738 Query 1739 GTGTTTCTCCAATTGACTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1739 GTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798 Query 1799 ACAAGACATCTCAGTAA 1815 | ||||||||||||||| Sbjct 1799 AAAAGACATCTCAGTAA 1815 > Ahg940266 jgi|Araly1|940266|scaffold_600810.1 Length=1082 Score = 859 bits (465), Expect = 0.0 Identities = 555/596 (93%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 1157 ATTCTCCAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 1216 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 ATTTTCAAGAAGCTACAAAGTTGAAATCTTGGTATGATGCTGAAGGGAAAGAGACATCTA 562 Query 1217 TGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACGGATCAAGATCCATGTATT 1276 ||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||| Sbjct 563 TGTCTGCTATTGGCTCTGGAATGGGTTCTTCTGCCAACAATGGATCAAGATCCATGTATT 622 Query 1277 CTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTTTAGGCGAGGAGAAGCCTG 1336 |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 623 CTGACAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTTTAGGTGAGGAGAAGCCTG 682 Query 1337 TATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAAACAATGTGGTACC 1396 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 683 TATTCTTTAGTACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAGACAATGTGGTACC 742 Query 1397 GTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGGACTCTGGTTATTGGTGTG 1456 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 743 GTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAAGCAATGGACTCTGGTTATTGGTGTG 802 Query 1457 AAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATATAATGGCGGTGAAAGTCT 1516 || |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 803 AAGGTTGTCTGAAAAAGGATCAAGAATGCAGCTTAAGGTATATAATGGCGGTGAAAGTCT 862 Query 1517 CCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATGAAGCAGAGAAGATTATCG 1576 | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 863 CTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATGAAGCAGAGAAGATTATTG 922 Query 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 923 GCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 982 Query 1637 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAGC 1696 |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 983 AGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGT-------A-- 1033 Query 1697 AAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1752 || | |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 -----TA-A-CAGTAAGAAGAGACAGAGGATAACTGTAAGAGGTGTTTCTCCAATT 1082 Score = 252 bits (136), Expect = 8e-66 Identities = 155/164 (95%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 945 GATGATCCCAAAGAGAGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 1004 ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GATGATCAC-AAGAGGGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTC 407 Query 1005 CCTTTGGAATGATCTAGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCA 1064 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 408 CCTTTGGAATGATCTAGCAACTGGCATAGGCCATGAACTGCTAGACATGGCTGATAATCA 467 Query 1065 CCCTGTTATCGCGATTAAATCTCTTAAAGTTGGAGCTTTTCAAG 1108 |||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 468 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAG 511 > Ahg892827 jgi|Araly1|892827|Al_scaffold_0006_823 Length=588 Score = 326 bits (176), Expect = 5e-88 Identities = 216/235 (92%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 1577 GCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTC 1636 |||||| || |||||| | |||| | ||||||||||||||||||| |||||||||||||| Sbjct 350 GCTGCATAGTTGATGAACCCAATAAACTAAAATCAGAGGAAGGTGGAGTGAATGAGTTTC 409 Query 1637 AGACAAA-ACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCCGGATTAGTGTTTCTCAG 1695 ||||||| | ||||||||| || ||||||| |||||||||||||||| |||||||||||| Sbjct 410 AGACAAAGA-TGAAAGAAGTTATTTGGTCACCTCATCTCTTCCGGATCAGTGTTTCTCAG 468 Query 1696 CAAGAGTATAACAGTGAGAAGAGACAGAGGA-TAACTGTAAGAGGTGTTTCTCCAATTGA 1754 |||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||| Sbjct 469 CAAGAGTATAACAGGGAGAAGAGACAGACGACT-ACTGTAAGAGGTGTTTCTCCAATTGA 527 Query 1755 CTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGAACAAGACATCT 1809 |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 528 CTTTACTGCTGAAACAAGATTATTGCTCCAAGACATCTCCAAGAACAAGACATCT 582 Score = 272 bits (147), Expect = 6e-72 Identities = 238/278 (86%), Gaps = 22/278 (8%) Strand=Plus/Plus Query 804 GTTTACCCCTGAAACT-AAATTCAACTTTGTACCCATTGATGAG-TTGGGTACATACGTG 861 ||||| |||||||| | ||||||||||||||||||| |||| || |||| ||||||||| Sbjct 18 GTTTATCCCTGAAA-TAAAATTCAACTTTGTACCCACTGATAAGTTTGGATACATACGTA 76 Query 862 AATCAGAAAGACC-------------TT-ATT---GATGTTATCGGTGTTGTTCAAAGTG 904 ||||||||||||| || ||| |||||||||||||||||||||| || Sbjct 77 AATCAGAAAGACCTTTATTGTGTTATTTCATTCCAGATGTTATCGGTGTTGTTCAAATTG 136 Query 905 TTTCTCCT-ACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAGAGAT 963 |||||||| || || ||||||||| ||| ||| ||||||||| ||||||||||||| ||| Sbjct 137 TTTCTCCTAACAAT-AGCATTAGACGGAGGAATGACAATGAGTTGATCCCAAAGAGGGAT 195 Query 964 ATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCTAGCA 1023 |||||| | || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 196 ATAACTGTAGCCGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCTACCA 255 Query 1024 ACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAA 1061 |||||||| |||||||||||||| |||||||||||||| Sbjct 256 ACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAA 293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68143448305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5