BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08050.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487637 jgi|Araly1|487637|fgenesh2_kg.6__771__AT5G08050.1 1074 0.0
> Ahg487637 jgi|Araly1|487637|fgenesh2_kg.6__771__AT5G08050.1
Length=723
Score = 1074 bits (581), Expect = 0.0
Identities = 688/737 (93%), Gaps = 18/737 (2%)
Strand=Plus/Plus
Query 1 GATCTACAAGCTCTTGGTTTCTCCATTGAAGAAAAAGCTTTGACAAAACCAGGGAAAGAG 60
||||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 1 GATCTACAAGCGCTTGGTTCCTCCATTGAAGAAAAAGCTTTGACAAAA-C---------- 49
Query 61 ACAGAGAGAGATAATGGCGGCTAAACTAATCTGTTCGTCTTTAACAGTGCATTCAATGGC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 -C--AGAGAGATAATGGCGGCTAAACTAATCTGTTCGTCTTTAACAGTGCATTCAATGGC 106
Query 121 AAATAAGAAGCCATCACCTTCTGCTGCAACAAGAACAATAACCTCAAAGAAGAGCACAGC 180
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 107 GAACAAGAAACCTTCACCTTCTGCTGCAACAAGAACAATAACCTCAAAGAAGAGTACAGC 166
Query 181 GACTCCACAGGTGAAACTGCTGACAAGAGTCGAGCAGCTCAAGCTTCTGACCAAAGCCGA 240
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 167 GACTCCACAGGTGAAACTACTGACAAGAGTTGAGCAGCTTAAGCTTCTGACCAAAGCCGA 226
Query 241 GAAAGCAGGACTTTTGTCTTTAGCAGAGAAATCAGGTTTCTCTCTATCGACCATCGAGCG 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 227 GAAAGCAGGACTTTTGTCTTTAGCAGAGAAATCAGGTTTCTCTCTATCAACCATCGAGCG 286
Query 301 TCTTGGATTGCTGACCAAAGCAGAGGAGTTCGGCGTTTTGTCTGCCGCCACAAACCCGGA 360
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 287 TCTTGGATTGCTGACCAAAGCAGAGGAATTCGGCGTTTTGTCTGCCGCAACAAACCCGGA 346
Query 361 AACGCCTGGAACGTTATTCACTTTGAGCCTCGGTTTACTCCTTCTTGGACCGGTTTTTGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 347 AACGCCTGGAACGTTATTCACTTTGAGCCTCGGTTTACTCCTTCTTGGACCGGTTTGTGC 406
Query 421 ATATGTGGTTCCTGAAGATTACACTTGGGAAGTAGTGATTCAGGTTCTTGTGGCTCTACT 480
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 407 ATATGTAGTTCCTGAAGATTACACTTGGGAAGTAGTGGTTCAGGTTCTTGTGGCTCTGCT 466
Query 481 CTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCTTCTGGTTTTGTCTCCAATTTGCAGAA 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 467 CTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCCTCTGGTTTTGTCTCCAATTTGCAGAA 526
Query 541 ATCTGATTAGCCCGATCGttttttttttGTATCAAATATATTTACCCGGTGTAGCAAGAG 600
|||||||||||||| ||| ||||||||||||||| || ||||||||| | ||||||||||
Sbjct 527 ATCTGATTAGCCCGCTCGGTTTTTTTTTGTATCACATTTATTTACCCCGAGTAGCAAGAG 586
Query 601 ACTTTTCTGCATTTAAGATGAAAACTTTATAATGTATTTGATCTACATT-GTATCA-ACC 658
||||||||||||||||||| |||||||||| |||||||||||||||||| ||| | |
Sbjct 587 ACTTTTCTGCATTTAAGATTAAAACTTTATGATGTATTTGATCTACATTTGTAGGGTATC 646
Query 659 AG-TCATTTTCACTATTTTCTATCTATGTAAATGGTTTCATATACAGAATCCAAGAGAAA 717
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AACTCATTTTCACTATTT-CTATCTATGTAAATGGTTTCATATACAGAATCCAAGAGAAA 705
Query 718 CGTTTTGAATTTCAATA 734
|||||||||||||||||
Sbjct 706 CGTTTTGAATTTCAATA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5