BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08080.3
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487641 jgi|Araly1|487641|fgenesh2_kg.6__775__AT5G08080.1 1434 0.0
> Ahg487641 jgi|Araly1|487641|fgenesh2_kg.6__775__AT5G08080.1
Length=1215
Score = 1434 bits (776), Expect = 0.0
Identities = 823/845 (97%), Gaps = 5/845 (1%)
Strand=Plus/Plus
Query 401 GCTTCCCATGAGGAGTCAAAATCTGTGACCAAAGCTCCTGCCATGAAGGCGATAAAGAAG 460
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 GCTTCCCATGAGGAGTCAAAAGCTGTGACCAAAGCTCCTGCCATGAAGGCGATAAAGAAG 433
Query 461 ACAATGGAAAAAGACGTTGATGAAGTTGGAAGTATTGCCCGTTTCATAAAGGGGAAACTC 520
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ACAATGGAAAAGGATGTTGATGAAGTTGGAAGTATTGCCCGTTTCATAAAGGGGAAACTC 493
Query 521 GAGGAGTTGGACAGAGAGAACTTGGCAAATAGACAAAAACCTGGATGTGCAAAAGGATCT 580
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GAGGAGTTGGATAGAGAGAACTTGGCAAATAGACAAAAACCTGGATGTGCAAAAGGATCT 553
Query 581 GGTGTGGATCGATCAAGAACAGCAACAACACTTTCCTTAAAGAAGAAGTTGAAAGACAAG 640
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 554 GGTGTGGATCGATCAAGAACAGCAACGACACTTTCCTTAAAGAAGAAGTTGAAAGACAAG 613
Query 641 ATGGCCGAGTTTCAGGTTCTACGAGAGAACATTCAACAAGAGTATCGCGATGTTGTTGAT 700
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 614 ATGGCCGAGTTTCAGGTTCTACGCGAAAACATTCAACAAGAGTATCGCGATGTTGTTGAT 673
Query 701 AGGCG-AGTTTATACAGTAACTGGGGAGCGGGCGGATGAAGATACTATTGATGAATTGAT 759
||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGGCGCA-TTTATACTGTAACTGGGGAGCGGGCGGATGAAGATACTATTGATGAATTGAT 732
Query 760 TGAAACTGGAAACAGCGAACAGATCTTCCAGAAAGCGATTCAGGAGCAAGGAAGAGGACA 819
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 733 TGAAACTGGAAACAGTGAACAGATCTTCCGGAAAGCGATTCAGGAGCAAGGAAGAGGACA 792
Query 820 GGTAATGGACACCTTGGCGGAAATCCAAGAACGTCATGATGCTGTCAGAGACTTGGAAAA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGTAATGGACACCTTGGCGGAAATCCAAGAACGTCATGATGCTGTCAGAGACTTGGAAAA 852
Query 880 GAAACTTCTTGACTTACAACAAATATTCTTGGATATGGCAGTTTTGGTTGATGCACAAGG 939
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GAAACTTCTTGACTTGCAACAAATATTCTTGGATATGGCAGTTTTGGTTGATGCACAAGG 912
Query 940 AGAAATGCTTGACAATATAGAATCTCAGGTGTCAAGTGCAGTAGATCACGTGCAATCGGG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGAAATGCTTGACAATATAGAATCTCAGGTGTCAAGTGCAGTAGATCACGTGCAATCGGG 972
Query 1000 AAACACGGCACTTCAAAGAGCAAAGAGCTTGCAGAAGAACTCAAGAAAATGGATGTGTAT 1059
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AAATACGGCTCTTCAAAGAGCAAAGAGCTTGCAGAAGAACTCAAGAAAATGGATGTGTAT 1032
Query 1060 TGCAATTATCATCCTCCTCATTGTGGTTGCAGTGATCGTTGTTGGTGTTCTCAAGCCTTG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGCAATTATCATCCTCCTCATTGTGGTTGCAGTGATCGTTGTTGGTGTTCTCAAGCCTTG 1092
Query 1120 GAAAAACAAGAGTGCTTGAGGAAAGAAAGAATGTACAAAAGAA-TATCAAATCCTTATTC 1178
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 1093 GAAAAACAAGAGTGCTTGAGGAAACAAAGAATGTACAAAAAAAATATCAAATCCTTATTC 1152
Query 1179 ACGGCTTTGAGTGAGAGTGTTTTGTTTATGATGTGTGtttttttttttACCAAGAAACGa 1238
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1153 ACGGCTTTGAGTGAGAGTGTTTTGTTCATGATGTGTGTTTTTTTTT--ACCAAGAAACGA 1210
Query 1239 aaaaa 1243
| |||
Sbjct 1211 ACAAA 1215
Score = 520 bits (281), Expect = 1e-146
Identities = 345/374 (92%), Gaps = 12/374 (3%)
Strand=Plus/Plus
Query 5 CTCTCATTATTTTGCTTGAGCCACAGATCCG-TT-T-CT---C---CTCTCGATTTGTCT 55
|||||||| |||||||||||||||||||||| || | || | ||||||||||||||
Sbjct 1 CTCTCATTCTTTTGCTTGAGCCACAGATCCGTTTCTCCTCCACTTTCTCTCGATTTGTCT 60
Query 56 TCTTCACTCAGTTTCTCGCTTGTTCTGTCAAAGATCGAAACTTTCCGGCGT-CTATTGTC 114
||||||||||||||||||||||| || | ||||||||| |||||||||||| || |||||
Sbjct 61 TCTTCACTCAGTTTCTCGCTTGTCCTTTGAAAGATCGACACTTTCCGGCGTCCT-TTGTC 119
Query 115 TTCGCACTATTGCACTCGTCTTCTTCTTCGTTCTTGGTGTGAACCGAAACTAAA-TTCTA 173
|||||||||||| | | ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TTCGCACTATTGAAGTTGTCTTCTTCTTCGTTCTTGGTGTGAACCGAAACTAAACTTTTA 179
Query 174 TCTTTTTGCTCTACACGATGAACGATCTTCTGAAGGGTTCGTTTGAGCTTCCCAGAGGTC 233
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 180 TCTTTTTGCTCTACACGATGAACGATCTTCTTAAGGGTTCGTTTGAGCTTCCCCGAGGTC 239
Query 234 AATCTTCTAGAGAAGGAGATGTTGAACTAGGGGAACAACAAGGTGGAGATCAAGGATTGG 293
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 AATCTTCTAGAGAAGGGGATGTTGAACTAGGGGAACAACAAGGTGGAGATCAAGGATTAG 299
Query 294 AAGATTTTTTCAAAAAGGTTCAAGTGATTGACAAACAGTATGATAAGCTAGACAAGCTTC 353
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 300 AAGATTTCTTCAAAAAGGTTCAAGTCATTGACAAACAGTATGATAAGCTAGATAAGCTTC 359
Query 354 TAAAGAAACTGCAG 367
|||||||||| |||
Sbjct 360 TAAAGAAACTTCAG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5