BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08260.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value Ahg940287 jgi|Araly1|940287|scaffold_600831.1 2355 0.0 > Ahg940287 jgi|Araly1|940287|scaffold_600831.1 Length=1482 Score = 2355 bits (1275), Expect = 0.0 Identities = 1419/1489 (95%), Gaps = 8/1489 (1%) Strand=Plus/Plus Query 64 GAGACGAGAAAGAGTTTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 123 |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAGAAGAGAAAGCG-TTTGGCGATGAAGAAGAACGCACTTTGGCTACTGTGCATTCTGGT 59 Query 124 GTTACCGGCGATAGCCTGTGGTAGGAAACCGGAGAAGAAGGTAACAATTTCATCCTCTGG 183 ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| Sbjct 60 GTTACCGGCGATAGCCTGTGGTAGGCAACCGGGGAAGAAGGTAACAGTTTCATCCTCTGG 119 Query 184 GAGGAAGGAAGATGACCTTGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTCAAACA 243 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 120 GAGGAAAGAAGATGACCTGGTAACCGGTTTGCCCGGCCAACCACCGGTTAACTTTAAACA 179 Query 244 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAAAAGGCACTTTTCTATTGGTT 303 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 CTACGCCGGTTACGTGAATCTGGGGCCTGAACAGAAGCAGAAGGCACTTTTCTATTGGTT 239 Query 304 CTTCGAAGCTCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 363 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTTCGAAGCCCAACAAAACTCTTCTCGTCGTCCTCTCGTCCTTTGGCTCAATGGAGGACC 299 Query 364 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCACGA 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 GGGTTGCTCATCAATAGCCTATGGAGCTGCACAAGAACTAGGCCCTTTTCTTGTTCAC-A 358 Query 424 C-AACGGTGGCAAACTTACCTACAATCATTTCTCTTGGAACAAAGAGGCCAATATGTTGT 482 | ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 359 CCAACGGTGACAAACTTACCTACAATAATTTCTCCTGGAACAAAGAGGCCAATATGTTGT 418 Query 483 TCTTGGAAGCGCCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 542 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TCTTGGAAGCACCGGTTGGGGTTGGGTTCTCGTATACCAATAACTCAATGGATCTTCAAA 478 Query 543 AGCTTGGAGATGAAGTTACTGCATCGGACTCTCTTGCTTTCCTGATCAACTGGTTCATGA 602 ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 479 AGCTTGGAGATGAAGTTACCGCAGCGGACTCTCTTGCTTTCTTGATCAACTGGTTCATGA 538 Query 603 AATTCCCCGAGTTCCGATCCAGCGAGTTCTACATCTCTGGCGAGAGTTACGCCGGTCACT 662 ||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||| Sbjct 539 AATTCCCCGAGTTCCGATCCAACGAGTTTTACATCTCCGGAGAGAGTTACGCCGGTCACT 598 Query 663 ATGTTCCTCAGCTCGCGGAGGTAATTTACGACAGGAACAAGAAGGTTACGAAAGACTCTA 722 ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| Sbjct 599 ATGTTCCTCAGCTTGCGGAGGTAATTTACGACAGGAACAAGAAG---ACAAAAGACTCTC 655 Query 723 GCATTAATCTCAAGGGATTCATGATAGGGAACGCGGTGATCAATGAGGCAACAGACATGG 782 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 656 GCATTAATCTCAAGGGTTTCATGATAGGGAATGCGGTGATCAATGAGGCAACAGACATGG 715 Query 783 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAGCA 842 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 716 CAGGACTAGTGGACTACGCATGGAGCCACGCTATAATATCGGACGAGGTCCACACCAACA 775 Query 843 TCCATGGCTCGTGCAGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 902 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TCCATGGCTCGTGCCGTTTTGAGGAAGATACCACCAACAAGACCGAACAATGCTACAACA 835 Query 903 ATTTCAAAGGGTTCATGGATGCTTACAATGATATCGATATATACAGTATCTACACTCCCG 962 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 836 ATTTCAAAGGGTTCATGGATGCTTACAACGATATCGATATATACAGCATCTACACTCCCG 895 Query 963 TTTGCCTCTCCTCTTTGTTGTCATCTTCTCCAAGAAAACCTAAAATCGTCGTGTCTCCTC 1022 |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct 896 TTTGCCTCTCCTCTTTGTCCTCATCTTCTCCAAGTAAACCTAAAATTGTCGTGTCTCCTC 955 Query 1023 GTCTCCTTACTTTTGACGATTTGTGGGACAAGTTTCCGGCCGGGTACGATCCATGCACTG 1082 ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 956 GTCTCCTTACTTTTGACGACATGTGGGTCAAGTTTCCGGCCGGGTACGATCCATGCACTG 1015 Query 1083 AAAGTTATGCCGAGAATTACTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAACG 1142 || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1016 AAGGTTATGCCGAAAATTATTTTAACCGGAAAGATGTGCAGGTTGCACTCCATGCGAATG 1075 Query 1143 TCACCAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAGTGATG 1202 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1076 TCACAAACCTTCCTTATCCGTACTCTCCTTGCAGCGGAGTAATAAAGAGATGGAATGATG 1135 Query 1203 CTCCATCCACCATGATTCCCATCATACAAAAGCTTTTGACGGGTGGCCTCCGTATCTGGA 1262 ||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||| Sbjct 1136 CTCCATCCACCATGATTCCCACCATACAAAAGCTTTCAACGGGCGGCCTCCGCATCTGGA 1195 Query 1263 TCTATAGTGGAGATACGGATGGGAGAGTTCCGGTAACATCTACACGTTATAGCATAAAAA 1322 ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1196 TCTATAGCGGAGATACGGACGGGAGAGTTCCGGTAACATCTACACGCTATAGCATAAAAA 1255 Query 1323 AGATGGGACTTAAGGTCGAGTCACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTAGCTG 1382 |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1256 AGATGGGACTTAAGGTTGAGTTACCGTGGAGGTCATGGTTCCACAAGAGTCAAGTGGCTG 1315 Query 1383 GATGGGTTGAGACTTATGCCGGTGGACTAAATTTTGTCACGGTGAGAGGAGCCGGTCACC 1442 |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1316 GATGGGTTGAGACTTATGCCGGAGGACTAACGTTTGTCACGGTGAGAGGAGCCGGTCACC 1375 Query 1443 AGGTTCCGGCCTTGGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCATTTCTTCTG 1502 |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1376 AGGTTCCGTCCTTTGCTCCGGCGCAATCTCTCACATTATTCTCTCACTTCCTTTCTTCAG 1435 Query 1503 TCCCCTTGCCTTCAAAACGGTTCTGATATCAGTACCGTCAAGTCATGAT 1551 | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1436 TGCCCTTGCCTTCAAAACGGTTCTGAT--CAGTACCGTCAAGTCATGAT 1482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62696543270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5