BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G08290.1

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940290 jgi|Araly1|940290|scaffold_600834.1                        765    0.0  


> Ahg940290 jgi|Araly1|940290|scaffold_600834.1
Length=479

 Score =  765 bits (414),  Expect = 0.0
 Identities = 452/471 (96%), Gaps = 0/471 (0%)
 Strand=Plus/Plus

Query  46   gagagagagagagagagagagaATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGC  105
            ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct  9    GAGAGAGAGAGAGAGAGAGAGGATGTCGTATCTTCTGCCGCATCTGCACTCCGGTTGGGC  68

Query  106  TGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA  165
            |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  69   TGTTGATCAGGCGATTCTGGCTGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA  128

Query  166  CTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAA  225
            |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct  129  CTGGGATGAGACTTGTATGCAGATGGATGAGGTGCTTTCCTCTGTTGCTGAGACGATAAA  188

Query  226  GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTA  285
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  189  GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTGCCAGACTTCAACACCATGTA  248

Query  286  CGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA  345
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  249  CGAGCTGTACGATCCTTCCACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA  308

Query  346  TCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT  405
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  309  TCTTGGTACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT  368

Query  406  TGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC  465
             |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  369  CGATATCATCGAGACCGTCTACCGCGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC  428

Query  466  AAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATC  516
            |||||||||||||||||||||||| |||||| || ||||||||||||||||
Sbjct  429  AAAAGATTACTCCACCAAATACCGCTACTAACCGGGCTTCCCAACACTATC  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26304812730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5