BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08290.1 Length=715 Score E Sequences producing significant alignments: (Bits) Value Ahg940290 jgi|Araly1|940290|scaffold_600834.1 765 0.0 > Ahg940290 jgi|Araly1|940290|scaffold_600834.1 Length=479 Score = 765 bits (414), Expect = 0.0 Identities = 452/471 (96%), Gaps = 0/471 (0%) Strand=Plus/Plus Query 46 gagagagagagagagagagagaATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGC 105 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 9 GAGAGAGAGAGAGAGAGAGAGGATGTCGTATCTTCTGCCGCATCTGCACTCCGGTTGGGC 68 Query 106 TGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA 165 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 69 TGTTGATCAGGCGATTCTGGCTGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGA 128 Query 166 CTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAA 225 |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || Sbjct 129 CTGGGATGAGACTTGTATGCAGATGGATGAGGTGCTTTCCTCTGTTGCTGAGACGATAAA 188 Query 226 GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTA 285 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 189 GAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTGCCAGACTTCAACACCATGTA 248 Query 286 CGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA 345 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 249 CGAGCTGTACGATCCTTCCACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGA 308 Query 346 TCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT 405 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TCTTGGTACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCAT 368 Query 406 TGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC 465 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 369 CGATATCATCGAGACCGTCTACCGCGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCC 428 Query 466 AAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATC 516 |||||||||||||||||||||||| |||||| || |||||||||||||||| Sbjct 429 AAAAGATTACTCCACCAAATACCGCTACTAACCGGGCTTCCCAACACTATC 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26304812730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5