BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08300.1 Length=1462 Score E Sequences producing significant alignments: (Bits) Value Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1 2388 0.0 Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1 1059 0.0 > Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1 Length=1456 Score = 2388 bits (1293), Expect = 0.0 Identities = 1406/1460 (96%), Gaps = 9/1460 (1%) Strand=Plus/Plus Query 1 AAAAGTGTAGCCTTTAA-AGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCTTC 59 |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1 AAAAGTGTAGCC-TTAAGAGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCCTC 59 Query 60 AAAACCGAGCTCCGCTGAATTTTCTTTGCTCCATTTCCGTCTTCACACAGTTTAGGGTTC 119 ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 60 AAAACTAAGCTCCGCTGAATTTTCTTTGTTCCATTTCCGTCTTCACCCAGTTTAGGGTTC 119 Query 120 ACAACTTGATTCGGATCGA-AAGCACCGAGAAGAAGAAGCCAATCAATCATGTCTAGACA 178 |||| |||||||||||||| || ||||||||||||||||||| |||||||||||||| || Sbjct 120 ACAAGTTGATTCGGATCGAGAA-CACCGAGAAGAAGAAGCCAGTCAATCATGTCTAGGCA 178 Query 179 AGTGGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGTCGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238 Query 239 AGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298 Query 299 GGATCCTCATCCTCCTGCGGCGGTTTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGG 358 ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 299 GGATCCTCATCCTCCTGCGGCTGTTTTCGTTGACAAAAACACACGAGTCATGTGTCAAGG 358 Query 359 CATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418 Query 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAA 478 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAA 478 Query 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538 Query 539 TCCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 ACCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598 Query 599 TATCACCGAAGGAATCCCTCAACATGACATGGTACGTGTAAAGCATGCTCTTAACAGTCA 658 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 599 TATTACCGAAGGAATCCCTCAACATGACATGGTACGTGTTAAGCATGCTCTTAACGGTCA 658 Query 659 ATCGAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATCCAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718 Query 719 AATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATC 778 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 719 GATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATC 778 Query 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838 Query 839 TTGTGTAGGAATCGGTGGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAA 898 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 839 TTGTGTAGGAATTGGTGGGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAA 898 Query 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGC 958 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGC 958 Query 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018 Query 1019 TATTGCTGGACTTACTGCACCACCGGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTC 1078 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1019 TATTGCCGGACTTACTGCACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTC 1078 Query 1079 CGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCTGGAGTGAAGGT 1138 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1079 TGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCCGGGGTGAAGGT 1138 Query 1139 TGTTGAATCTCCGGCTAAGATTGGATCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1139 TGTTGAATCTCCGGCTAAGATTGGAGCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198 Query 1199 TTTGAAGCAGTGAAGTGAATTTCACTAGCTTT--CGCTTCtttttttCCATCTTGAAACC 1256 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 1199 TTTGAAGCAGTGAAGTGAATTTCACGAGCTTTTTCGCTTCTTTTTTTCCATCTTGAAACC 1258 Query 1257 TTCAAGaaaaaa-gaaaagaaaaaaaCCCTAATTCCACGCCATTGATGGCTGCACACTTT 1315 |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct 1259 TTCAAGAAAAAAAGAAAA-AAAAAA-CCCTAATTCCACGCCATTGATGGCTGCACACTCT 1316 Query 1316 TTTGGGGTTTGTTTTGCTATATTGATATGATTTTTCCAATTGAACAGTGATAATTAAAAG 1375 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| Sbjct 1317 TTTGGGGTTTGTTTTGCTAAATTGATATGATTTTTCCAATTGAAGAGTGATAATTCAAAG 1376 Query 1376 AGATTCAAATCTTATGGCATTGGATTATTTTTAATGTTATCTTCCAGTACAAGAAATAAG 1435 ||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||| | Sbjct 1377 AGATTCAAATCTTATTGCATTGGATCATTTTTAATGATATCTTCCAGTGCAAGAAATATG 1436 Query 1436 AGTGAAGCAATGTTTCTTTA 1455 || ||||||||||||||||| Sbjct 1437 AGGGAAGCAATGTTTCTTTA 1456 > Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1 Length=1275 Score = 1059 bits (573), Expect = 0.0 Identities = 831/955 (87%), Gaps = 20/955 (2%) Strand=Plus/Plus Query 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319 ||||||||||| ||||| || ||||||||||||| | | | ||||| ||||||||||| Sbjct 160 TCTCTCACTTCATTGACACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 218 Query 320 GGT-TTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGGCATCACCGGAAAGAACGGCA 378 || ||| || ||||||||||| || ||| |||| ||||| || ||||||||||| || | Sbjct 219 TGTCTTT-GTCGACAAAAACACCCGCGTCATCTGCCAAGGTATTACCGGAAAGAATGGTA 277 Query 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438 | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 278 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 337 Query 439 AGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAACT-CTGTTGCTGAAGCTAAG 497 ||||||||||||| ||||| |||||||| || ||||| || | ||||||||||||||||| Sbjct 338 AGAAGGGTGGAACTGAACATTTGGGTCTACCTGTTTTTAA-TACTGTTGCTGAAGCTAAG 396 Query 498 GCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCTCCTTTTGCTGCTGCTGCT 557 ||||| || ||||||||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct 397 GCTGAGACTAAAGCCAATGCCTCTGTGATTTACGTACCTGCGCCTTTCGCTGCTGCTGCT 456 Query 558 ATTATGGAGGGTATTGAG--GCTGAGTTAGATCTTATTGTGTGTATCACCGAAGGAATCC 615 || ||||| ||| || || |||||||||||||| ||||| || || || |||||||| | Sbjct 457 ATCATGGAAGGT-TT-AGCTGCTGAGTTAGATCTCATTGTCTGCATTACTGAAGGAATTC 514 Query 616 CTCAACATGACATGGTACGTGTAAA-GCATGCTCTTAACAGTCAATCGAAAACTAGGCTG 674 |||||||||||||||| || ||||| || |||||||||||||||||| ||||||||||| Sbjct 515 CTCAACATGACATGGTTCGCGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTA 573 Query 675 ATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCG 734 ||||| || ||||||||||| |||||||| |||||||||||||| ||||| || |||||| Sbjct 574 ATTGGCCCTAACTGCCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCG 633 Query 735 GGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATCTGGAACCTTGACATAT 794 ||||||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||| Sbjct 634 GGATACATCCACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATAT 693 Query 795 GAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATCGGT 854 ||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| Sbjct 694 GAAGCTGTTTTCCAAACTACTGCAGTAGGTCTGGGGCAATCTACATGTGTAGGAATCGGT 753 Query 855 GGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAAATTCTTTGTTGATCCT 914 |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||| ||| ||| Sbjct 754 GGGGATCCGTTTAATGGCACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGCTGACCCT 813 Query 915 CAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCA 974 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 814 CAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGTACTGCAGAAGAAGATGCCGCT 873 Query 975 GCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCTGGACTTACT 1034 || ||||| |||| ||||||||| || |||||||| |||||||| ||||||||||||||| Sbjct 874 GCTTTGATTAAGGAAAGTGGTACAGACAAGCCTGTAGTTGCTTTCATTGCTGGACTTACT 933 Query 1035 GCACCACC-GGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTCCGGTGGTAAAGGTAC 1093 |||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||| || || Sbjct 934 GCACCACCCGGG-CGTCGTATGGGTCATGCGGGAGCCATTGTTTCTGGTGGTAAGGGCAC 992 Query 1094 GGCTCAGGACAAAATTAAGAGTTTGA-ATGATGCTGGAGTGAAGGTTGTTGAATCTCCGG 1152 ||||| ||||| || ||||| | | | || || ||||| ||||| ||||| || || | Sbjct 993 AGCTCAAGACAAGATAAAGAGCCTAAGA-GACGCAGGAGTTAAGGTGGTTGAGTCACCAG 1051 Query 1153 CTAAGATTGGAT-CAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205 |||||||||| | | ||||||| |||| | |||| |||||||||||||||||||| Sbjct 1052 CTAAGATTGG-TGCGGCGATGTTTGAGAT-TTTCCAAGAAAGAGGTCTTTTGAAG 1104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54697591820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5