BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08370.1 Length=1525 Score E Sequences producing significant alignments: (Bits) Value Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 1973 0.0 > Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 Length=1438 Score = 1973 bits (1068), Expect = 0.0 Identities = 1239/1320 (94%), Gaps = 17/1320 (1%) Strand=Plus/Plus Query 18 TTTTGATTTTTCTTGAA-C-ctctctctctctc--AATCTGTTTATAGCCATTGAAGG-A 72 ||||||||||||||||| | ||||||||||||| | || || ||||||||||||||| | Sbjct 1 TTTTGATTTTTCTTGAATCTCTCTCTCTCTCTCTGAGTCAGTGTATAGCCATTGAAGGAA 60 Query 73 A--ACAAGAAAAAAGCTTGATCAAGCAATGGTTCTTCTTAGTTTCTCCTTAAGATTCATT 130 | | || |||||||||||||||||||||||||||| || |||||| ||||||||||||| Sbjct 61 ATTAAAAAAAAAAAGCTTGATCAAGCAATGGTTCTTATTGGTTTCTTCTTAAGATTCATT 120 Query 131 GCGTTCACTCTGACTATAACTCTGACTCAGATTGCTGATGGGTTTCAGAGTCGAATGTTG 190 | |||||||||||| | ||||||| || | | ||||||||||||||||||||||||| Sbjct 121 ACCTTCACTCTGACTCTGACTCTGA-TC-G--T--TGATGGGTTTCAGAGTCGAATGTTG 174 Query 191 ATGAACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 250 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 ATGCACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 234 Query 251 TGTAATATCAATGAAACCCTTATCAAACAAACCGCTGATGCAATGGTTTCAAGTGGTCTT 310 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 235 TGTAACATCAATGAGACCCTCATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTT 294 Query 311 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 354 Query 371 TCTCAGGGGAGTTTGGTTGCAAAAGCATCAACATTTCCTTCAGGAATCAAAGCTTTATCA 430 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 355 TCTCAGGGGAGTTTGGTTGCGAAAGCATCGACATTTCCTTCAGGAATCAAGGCTTTATCA 414 Query 431 GATTATGTTCATAGCAAAGGGCTAAAACTTGGGATATACTCTGATGCCGGGACTCTTACC 490 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 415 GATTATGTTCATAGCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGGACTCTTACC 474 Query 491 TGCAGCCAAACCATGCCGGGATCACTCGGGCATGAAGAACAAGATGCCAAGACATTTGCC 550 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 475 TGCAGCCAAACCATGCCGGGCTCACTCGGGCATGAAGAACAAGATGCCAAAACATTTGCC 534 Query 551 TCATGGGGGATTGATTACCTCAAGTATGATAACTGCGAAAATACAGGGACAAGTCCAAGA 610 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 535 TCATGGGGGATTGATTACCTGAAGTATGATAACTGCGAAAATACTGGGACAAGTCCAAGA 594 Query 611 GAAAGATACCCTAAGATGAGTAAAGCGCTGTTAAATTCAGGAAGATCCATATTCTTCTCT 670 |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| Sbjct 595 GAAAGATACCCTAAGATGAGCAAAGCTCTGCTAAATTCAGGAAGATCCATATTCTTCTCT 654 Query 671 CTGTGCGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 730 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 CTGTGTGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 714 Query 731 AGAACAACAGGAGATATCCAAGATAATTGGAAAAGCATGACATTGATAGCGGATCAGAAT 790 |||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| ||| Sbjct 715 AGAACAACAGGAGACATCCAAGATAACTGGAAAAGCATGACCCTGATAGCAGATCAAAAT 774 Query 791 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 834 Query 851 GGAAATGGAGGCATGACTAAGGAAGAATACATGTCGCATTTCAGCATCTGGGCATTGGCA 910 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 835 GGAAATGGAGGGATGACTAAGGAAGAATACAGGTCGCATTTCAGCATCTGGGCATTGGCA 894 Query 911 AAAGCTCCTCTGCTGATCGGCTGCGATCTTAGATCGATGGACAAAGTTACATTTGAATTG 970 ||||||||||||||||| || || |||||||||||||||||||| ||||| || || ||| Sbjct 895 AAAGCTCCTCTGCTGATAGGGTGTGATCTTAGATCGATGGACAATGTTACCTTCGAGTTG 954 Query 971 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1014 Query 1031 GTAAAGAAAGAAGGTGATCTTGAGGTATGGGCAGGTCCACTAAGCAAGAAACGAGTAGCG 1090 | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1015 ATCAAGAAAGATGGTGATCTTGAGGTATGGGCAGGTCCGCTAAGCAAGAAACGAGTAGCG 1074 Query 1091 GTCATCCTATGGAACAGAGGATCAGCATCTGC-AAACATCACAGCTCGATGGGCTGAGAT 1149 ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| || Sbjct 1075 GTCATCCTATGGAACAGAGGATCAGTATCTGCCAAA-ATCACAGCTCGATGGGCTGACAT 1133 Query 1150 TGGCCTCAATTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACATATTC 1209 |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1134 TGGCCTTAGTTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACACATTC 1193 Query 1210 ATGTGTTAAAAAGCAGCTATCTGCCCTAGTGGAGCCTCATGCCTGCAAAATGTATACTCT 1269 | |||||||||| || || |||||| |||||||||||||||||||||||||||| ||||| Sbjct 1194 ACGTGTTAAAAATCAACTCTCTGCCTTAGTGGAGCCTCATGCCTGCAAAATGTACACTCT 1253 Query 1270 TACAAGACGCAAGGCATAAGATGCCAA-TCTGGTGCAGATAAAGTTATGGAAGTAAAACT 1328 |||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||| Sbjct 1254 TACAAGACGCAAGGCATAAGAT-CCTGCTCTAATGCAGCTAAAGTTATGGAAGTAAAACT 1312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57097277255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5