BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08380.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg487672 jgi|Araly1|487672|fgenesh2_kg.6__806__AT5G08380.1 2034 0.0 Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 213 3e-54 > Ahg487672 jgi|Araly1|487672|fgenesh2_kg.6__806__AT5G08380.1 Length=1482 Score = 2034 bits (1101), Expect = 0.0 Identities = 1367/1487 (92%), Gaps = 51/1487 (3%) Strand=Plus/Plus Query 28 TTCTTCTACTACAAAGTACAAAG-CAGTGTTCGTCAACTA-TCTTCTTCTCACTCTGT-- 83 ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| Sbjct 1 TTCTTCTACTACAAAGTACAAAGCCAGTGTTCGTCAAC-AGTCTTCTTCTCACTCTGTGA 59 Query 84 TT----TCGTTTAGAGAGATTTTGCAGAGATGTCGAG-AC--GAGCAATGGTGATAAAGA 136 || | |||||||||| ||||||||||||| |||| || |||||||||||||||||| Sbjct 60 TTAAGCTTGTTTAGAGAGGTTTTGCAGAGATGGCGAGAACTAGAGCAATGGTGATAAAGA 119 Query 137 TGCCAATACTTATGATACTGATTTCATCAATGGTGATGACGATGGTCGAGTCTTCGAGAT 196 || ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 120 TGTCAACACTTATGATACTGATTTCATTAATGGTGATGAATATGGTCGAGTCTTCGAGAT 179 Query 197 CAGTT---AA---TAATGGTCATGACGATTCTGAGATCTTACGAAGACACTTGCTCACTA 250 ||||| || |||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 180 CAGTTAACAAGGTTAATAATGGTGACGATTCTGAGATCTTACGAAGACTCTTGCTCACTA 239 Query 251 ATGGCCTCGGAGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTTAGCTGCAACA 310 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 240 ATGGCCTCGGCGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTCAGCTGCAACA 299 Query 311 TAGATGAAAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGC 370 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 300 TAGATGAGAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACTACTGGCCTCTCTAAGC 359 Query 371 TTGGCTACAACTATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAGG 430 |||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 360 TTGGTTACAAATACGTTAACATCGATGATTGTTGGGCTGAAATTTCTCGTGACAGCAAGG 419 Query 431 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGAATTAAAGCGGTTGCGGATTATG 490 ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct 420 GAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGTATTAAAGCGCTTGCTGATTATG 479 Query 491 TTCACAGTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTATTTCACTTGCAGTA 550 |||| || || ||||||||||| |||||||||||||||||||||||||| || ||||| | Sbjct 480 TTCATAGCAAGGGCCTTAAGCTCGGGATTTACTCAGATGCCGGGTATTTTACCTGCAGCA 539 Query 551 AAACCATGCCAGGTTCTTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 610 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 540 AAACCATGCCAGGTTCTTTAGGCTATGAGGAGCATGATGCCAAGACATTTGCAGAATGGG 599 Query 611 GAATTGATTACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGGT 670 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 600 GAATTGATTACTTGAAGTATGACAACTGCAACAACGATGGCTCTAAACCGACTGTCAGGT 659 Query 671 ATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTG 730 |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 660 ATCCGGTGATGACCCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCACTGTGTG 719 Query 731 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCA 779 Query 791 CTAATGACATTAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 850 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTAGTGACATCAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCT 839 Query 851 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATG 899 Query 911 GAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 970 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GAGGAATGACGAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTC 959 Query 971 CTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATGGAGATTGTCGCCA 1030 ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct 960 CTCTTCTACTTGGCTGTGACATAAGAAACATGACCAAGGAAACAGTGGAGATTGTCGCAA 1019 Query 1031 ACAAGGAAGTCATTGCTATTAATCAAGA---------T-C--------C-ACATGGTGTT 1071 ||||||||||||| |||||||||||||| | | | ||| ||||| Sbjct 1020 ACAAGGAAGTCATAGCTATTAATCAAGAAAAGGAAAGTTCTTGTAGATCCACACGGTGT- 1078 Query 1072 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGT 1138 Query 1132 TACAGAGTAGCTTTGCTTCTATTGAACCGTGGACCATCGCGAACTTCGATTACTGCTCTT 1191 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1139 TACAGAGTAGCTTTGCTTCTGCTGAACCGTGGACCATCACGAACTTCGATTACTGCTCTC 1198 Query 1192 TGGGAGGATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGCAC 1251 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1199 TGGGATGATATTGAGATCCCTGCAAATAGCATTGTTGAAGCCAGAGATCTATGGCAGCAC 1258 Query 1252 CAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1311 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1259 AAGACATTGAAGCAAAAGTTTGTAGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGT 1318 Query 1312 AAGTTGTATGTTCTCAAAC---C-----TGTTGCCTGAAAATACATGTGTATAGAGAG-- 1361 ||||||||| ||||||||| | |||||||| ||||||||| | |||||| Sbjct 1319 AAGTTGTATATTCTCAAACAGTCAAACCTGTTGCCT-AAAATACATAA--AGAGAGAGTT 1375 Query 1362 AGTTAGTGTGGCTACGTCACGTTGTATTCTCCAGTTATTCTGTAAAAACAATAAGGGTTC 1421 | ||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||| Sbjct 1376 AATTAGTGTGGCTACGTTACGTTGTAATCTCCAATAATTCTGTAAAAACAATAAGGGTTC 1435 Query 1422 GTCTCAAATTAAATCTCCACAGATGTTCTCCAATAAATTGTTCGAAA 1468 |||||||||| |||||||||||| |||||||||||||||||| ||| Sbjct 1436 GTCTCAAATTGGATCTCCACAGATATTCTCCAATAAATTGTTCTAAA 1482 > Ahg487670 jgi|Araly1|487670|fgenesh2_kg.6__804__AT5G08370.1 Length=1438 Score = 213 bits (115), Expect = 3e-54 Identities = 651/897 (73%), Gaps = 88/897 (10%) Strand=Plus/Plus Query 266 CTCCTCCCATGGGGTGGAATAGCTGGAACCATTTT-AGCTGCAACAT-AGATGAAAAAAT 323 |||||| ||||| ||||| |||||||| |||||| || || ||||| | |||| | | Sbjct 197 CTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG-TGTAACATCA-ATGAGACCCT 254 Query 324 GATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGC--TTGGCTACAAC 381 |||||| |||| |||||||| ||||| | | ||| || ||| || | || ||||| Sbjct 255 CATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTTTCT--GCAATAGGTTACAAG 312 Query 382 TATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACA-GC-AAGGGAAGTCTGG 439 ||| | ||||| |||||||| |||| || || || | || | | |||| ||| ||| Sbjct 313 TATATCAACATAGATGATTGTTGGGGTG-AA-CTCAAGAGAGATTCTCAGGGGAGTTTGG 370 Query 440 -TGCCAAAGAAGTCAAC-TTTCCCTTCTGGAATTAAAGCGGTT-GCGGATTATGTTCACA 496 ||| |||| | || || ||| ||||| ||||| || || || | ||||||||||| | Sbjct 371 TTGCGAAAGCA-TCGACATTT-CCTTCAGGAATCAAGGC-TTTATCAGATTATGTTCATA 427 Query 497 GTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTA-T-TTCACTTGCAGTAAAAC 554 | ||||| || ||||||||||| ||||| ||||||||| | | || || ||||| |||| Sbjct 428 GCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGG-ACTCTT-ACCTGCAGCCAAAC 485 Query 555 CATGCCAGGTTC-TTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGGGAA 613 |||||| || || | ||| | || || || |||||||| |||||||| |||||| | Sbjct 486 CATGCCGGGCTCACTCGGGC-ATGAAGAACAAGATGCCAAAACATTTGCCTCATGGGGGA 544 Query 614 TTGATTACTTGAAGTATGACAACTGC-AACAGCGA-TGGCTCTAA-ACCTACTGTCAGGT 670 |||||||| |||||||||| |||||| || | | ||| | || || | | || | Sbjct 545 TTGATTACCTGAAGTATGATAACTGCGAA-A-ATACTGGGAC-AAGTCCAAGAGAAAGAT 601 Query 671 ATCC-AGTGATGACTC-GAGCTCTGATGAAA-TCTGGCCGCCCCATCTTTC-ACTCAT-T 725 | || | ||||| | ||||||| | ||| || || | |||| ||| ||| | | Sbjct 602 ACCCTA-AGATGA-GCAAAGCTCTGCT-AAATTCAGGAAGATCCAT-ATTCTTCTC-TCT 656 Query 726 GTGTGAATGGGGA-GATATGCATCCAGC-TCTATGGGGATCTCCAG-TA--GGCAACAGT 780 ||||||||||||| | | | ||||||| || | ||| | || || ||||||||| Sbjct 657 GTGTGAATGGGGACAAGA-GGATCCAGCAACT-T-GGG--CAGGAGATATTGGCAACAGT 711 Query 781 TGGAGAACCACTA--ATGACATTAAAGAT-ACTTGGCTTAGTATGATCTC-AATAGCAGA 836 |||||||| || | | ||||| ||||| || ||| || |||| | | |||||||| Sbjct 712 TGGAGAACAAC-AGGA-GACATCCAAGATAAC-TGGAAAAGCATGA-CCCTGATAGCAGA 767 Query 837 -CATGAATGAAGTCTACGCTG-AGC--ATGCAAGACCTGG-TGGCTGGAACGACCCGGAT 891 || |||| | || | | | | | |||||||||| || | | |||||||| || || Sbjct 768 TCA-AAATG-A-TCGATG-GGCATCTTATGCAAGACCAGGATCG-TGGAACGATCCAGAC 822 Query 892 ATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTC-CATTTCAGCAT 950 ||||||||||||||||||||||||||||| || || || |||| ||| ||||||||||| Sbjct 823 ATGCTTGAAGTGGGAAATGGAGGGATGACTAAGGAAGAATACAG-GTCGCATTTCAGCAT 881 Query 951 ATGGGCAATCTCAAAGGCTCCTCTTCT-ACTTGGTTGTGA-CATAAGAAAC-ATG-ACCA 1006 |||||| | |||| |||||||| || | | || ||||| | || || | ||| || | Sbjct 882 CTGGGCATTGGCAAAAGCTCCTCTGCTGA-TAGGGTGTGATCTTA-GAT-CGATGGAC-A 937 Query 1007 AAGAAACAATGGAGATTG-TC-GCCAACAAGGAAGTCATTGCTATTAATCAAGATCCA-C 1063 | | || | ||| ||| | || ||||| || || |||||| |||||||||| | | | Sbjct 938 ATGTTACCTTCGAG-TTGCTTAGC-AACAAAGAGGTGATTGCTGTTAATCAAGA-CAAAC 994 Query 1064 ATGGTGTTC-AGGCCAAGAAAGTTA-GAATGGAAGGCGATCTCGAGGTTTGGGCAGG 1118 ||| | || ||| |||||| | | ||| | | || ||||| ||||| |||||||| Sbjct 995 TTGG-GATCCAGGGAAAGAAAATCAAGAAAG-ATGGTGATCTTGAGGTATGGGCAGG 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5