BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08410.1 Length=736 Score E Sequences producing significant alignments: (Bits) Value Ahg325438 jgi|Araly1|325438|fgenesh1_pm.C_scaffold_6000658 889 0.0 > Ahg325438 jgi|Araly1|325438|fgenesh1_pm.C_scaffold_6000658 Length=1434 Score = 889 bits (481), Expect = 0.0 Identities = 532/557 (96%), Gaps = 2/557 (0%) Strand=Plus/Plus Query 55 GATGACTAACAGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 114 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 GATGACTAACGGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 938 Query 115 TCAAGACTATCTAG-TTGCTGCTTCTCTTAGTGGACGCAAATCGATCAACTCTTCATCTT 173 |||||||| ||||| || |||||||||||| |||||| |||||||||| ||||||||||| Sbjct 939 TCAAGACTGTCTAGCTT-CTGCTTCTCTTAATGGACGTAAATCGATCACCTCTTCATCTT 997 Query 174 CGTCCATTTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGCCTTCT 233 | ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 998 CTTCCATCTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGGCTTCT 1057 Query 234 CAATCTCGCGGAAGAATCCAAAATCGACGATTCGTTGCGATATTGCTGTGAAATCGGCGG 293 |||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| | Sbjct 1058 CAATCTCGCGAAAGAATCCAAGATCGACAATTCGTTGTGATATTGCTGTGAAATCGGCAG 1117 Query 294 CTTCTGTAGACGCGGACGCTGATCTATCGTCATCTACGTCGTTGGAGACGGAGGAAGACG 353 ||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 1118 CTTCTGTCGACGCGGACGCTGATCTTTCTTCATCTACGTCATTGGAGACTGAGGAAGACG 1177 Query 354 AGAAAGCGAAGGAGAAGATTGGAGCTAGGGTTAGGGTTACGGTTCCGTTGAAAGTTTACC 413 |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1178 AGAAGGCGAAGGAGAAGATTGGGGCTAGGGTTAGGGTTACGGTGCCGTTGAAAGTTTACC 1237 Query 414 ATGTGGTTCGTGTACCGGAGGTTGAATTGATGGGAATGGAAGGTTTTATCAAAGATTACG 473 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1238 ATGTGGTTCGTGTACCGGAGGTTGAGTTGATGGGAATGGAAGGTTTTATCAAAGATTACG 1297 Query 474 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAGTTCGTGA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1298 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAATTCGTGA 1357 Query 534 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 1417 Query 594 AGTTAATTGATCCGTGA 610 ||||||||||||||||| Sbjct 1418 AGTTAATTGATCCGTGA 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27105393987 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5