BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08590.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940352 jgi|Araly1|940352|scaffold_600896.1 1762 0.0
Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 525 3e-148
> Ahg940352 jgi|Araly1|940352|scaffold_600896.1
Length=1097
Score = 1762 bits (954), Expect = 0.0
Identities = 1053/1100 (96%), Gaps = 9/1100 (1%)
Strand=Plus/Plus
Query 187 TACGG-TATTGATTTGGAAATATGGACAAGTATGACGTTGTCAAGGATCTGGGAGCTGGA 245
||||| | ||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 2 TACGGTTGTTGATTTGG-AA-ATGGACAAGTATGATGTTGTCAAGGATCTGGGAGCTGGG 59
Query 246 AATTTCGGTGTGGCTCGCCTTCTCAGGCACAAGGACACCAAAGAGCTTGTTGCCATGAAA 305
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 60 AATTTCGGTGTGGCTCGCCTTCTTAGGCACAAGGACACTAAAGAGCTTGTTGCCATGAAA 119
Query 306 TACATCGAGAGAGGTCGCAAGATAGATGAGAACGTGGCGAGAGAGATTATTAATCACAGA 365
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 120 TACATCGAGAGAGGCCGCAAGATAGATGAGAACGTGGCGAGAGAGATCATCAACCACAGA 179
Query 366 TCACTTAAACATCCTAATATCATCCGGTTCAAGGAGGTGATCCTGACACCTACTCATCTT 425
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TCACTTAAGCATCCTAATATCATCCGGTTCAAGGAGGTGATTCTGACACCTACTCATCTT 239
Query 426 GCTATTGTGATGGAGTATGCTTCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTATTGTGATGGAGTATGCTTCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGT 299
Query 486 AGATTTAGTGAAGCTGAGGCTAGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGATTAC 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AGATTTAGTGAAGCTGAGGCTAGGTACTTCTTTCAACAGCTGATTTGTGGTGTTGACTAC 359
Query 546 TGCCATTCCTTGCAAATATGTCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCCATTCCTTGCAAATATGTCATAGAGACCTGAAGCTTGAGAACACACTGCTCGATGGG 419
Query 606 AGCCCTGCTCCGCTTTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCCCTGCTCCGCTTTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTATACTACAT 479
Query 666 TCTAGGCCTAAATCAACTGTTGGAACTCCAGCTTACATAGCACCTGAAGTTCTTTCACGG 725
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 TCTAGGCCTAAATCGACTGTTGGAACTCCAGCATACATAGCACCTGAAGTTCTTTCACGG 539
Query 726 AGAGAATATGATGGCAAGCACGCGGATGTGTGGTCATGTGGAGTAACCCTTTATGTGATG 785
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 AGAGAATATGATGGCAAGCACGCGGATGTGTGGTCATGTGGCGTAACCCTTTATGTGATG 599
Query 786 CTGGTGGGAGCTTACCCGTTTGAGGACCCTAATGATCCAAAAAACTTCAGGAAAACAATC 845
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CTGGTTGGAGCTTACCCGTTTGAGGACCCTAATGATCCAAAGAACTTCAGGAAAACAATC 659
Query 846 CAGCGCATAATGGCTGTACAATACAAGATCCCGGACTATGTTCACATATCTCAGGAATGC 905
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 660 CAACGTATAATGGCTGTACAATACAAGATCCCGGACTATGTACACATATCCCAGGAATGC 719
Query 906 AAACATCTTCTCTCTCGCATATTCGTCACTAACTCTGCTAAGAGAATCACACTTAAGGAG 965
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 720 AAACACCTTCTCTCTCGCATATTCGTCACTAACTCCGCAAAGAGAATCACGCTTAAGGAG 779
Query 966 ATCAAGAATCATCCGTGGTACTTGAAGAATTTGCCAAAGGAGCTGCTAGAGTCGGCTCAA 1025
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 ATCAAGAATCATCCGTGGTACTTGAAGAACTTGCCAAAGGAGCTGCTAGAGTCGGCTCAA 839
Query 1026 GCGGCGTATTACAAGAGAGACACAAGCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAG 1085
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 GCAGCATATTACAAGAGAGACACGAGCTTCTCTCTTCAAAGCGTAGAGGACATAATGAAG 899
Query 1086 ATAGTTGGAGAAGCAAGGAATCCAGCTCCATCAACTAGTGCTGTCAAAAGCTCGGGCTCa 1145
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 ATAGTTGGAGAAGCAAGGAATCCAGCTCCATCTACTAGTGCTGTCAAAAGCTCGGGCTCA 959
Query 1146 ggagctgatgaagaagaggaagaggacgttgaagctgaagtggaagaggaagaagatgat 1205
| |||||| |||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 960 GAAGCTGAGGAAGAAGAGGAAGAGGACGTTGAAGCTGAAGTGGAAGA--A-GATGA--A- 1013
Query 1206 gaagacgaaTACGAGAAGCATGTCAAAGAGGCACAGTCTTGTCAAGAGTCTGACAAAGCT 1265
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1014 GAAGACGAATACGAGAAGCATGTCAAAGAGGCACAGTCTTGTCAAGAGCCTCACAAAGAT 1073
Query 1266 TAAAAAGAAAAATGCTCTCT 1285
||||| | ||||||||||||
Sbjct 1074 TAAAAGGCAAAATGCTCTCT 1093
> Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1
Length=1585
Score = 525 bits (284), Expect = 3e-148
Identities = 732/942 (78%), Gaps = 56/942 (6%)
Strand=Plus/Plus
Query 202 GAAATATGGACAAGTATGACG-TTGTCAAGGATC-TGGGAGCTGGAAATTTCGGTGTGGC 259
|||| ||||||||||| || | |||| || || | | || ||||| ||||| || |||||
Sbjct 273 GAAA-ATGGACAAGTACGA-GCTTGTTAAAGA-CATCGGTGCTGGGAATTTTGGAGTGGC 329
Query 260 TCGCCTTC-TCAG-GCACAAGGACACCAAAGAGCTTGTTGCCATGAAATACATCGAGAGA 317
| | | || | || | ||| || ||||||| || ||||| ||||| ||||||||| |
Sbjct 330 TAGGC-TCATGAGAG-TCAAAAACTCCAAAGAACTCGTTGCTATGAAGTACATCGAGCGT 387
Query 318 GGTCGC-AAGATAGATGAGAACGTGGCGAGAGAGATTATTAATCACAGATCACTTAAACA 376
|| | | ||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 388 GG-CCCAAAGATTGATGAGAACGTGGCGAGAGAGATTATTAATCATAGATCACTTCGTCA 446
Query 377 TCCTAATATCATCCGGTTCAAGGAGGTGATCCTGACACCTACTCATCTT-GCTATTG-TG 434
||| ||||| |||||||| ||||||||| | ||||||| || || | | || |||| |
Sbjct 447 TCCCAATATAATCCGGTTTAAGGAGGTGGTTTTGACACCAACACA-CATCGCCATTGCT- 504
Query 435 ATGGAGTATGCTTCTGGAGGAGAGCTCTTTGATCGAATCTGTACTGCCGGTAGATTTAGT 494
||||| | |||| |||| || ||| | ||||| || || |||| ||| || ||||| |||
Sbjct 505 ATGGAATTTGCTGCTGGCGGTGAGTTATTTGAGCGTATATGTAGTGCTGGAAGATTCAGT 564
Query 495 GAAGCTGAGGCTAGGTACTTCTTTCAA-CAGCTGATTTGTGGTGTT-GATTACTGCCATT 552
|| | |||||| || ||||| |||| | ||||| || | ||| || | | | ||||||
Sbjct 565 GAGGATGAGGCAAGATACTT-TTTCCAGCAGCTTATATCTGGAGTCAGCT-ATTGCCATG 622
Query 553 CCT-TGCAAATATGTCATAGAGACCTGAAGCTTGAGAACACACTGCTCG-ATGGGAGCCC 610
| | |||||||||| |||||||| |||||||| || || || || || | |||| || ||
Sbjct 623 C-TATGCAAATATGCCATAGAGATCTGAAGCTCGAAAATACCCT-CTTGGATGGAAGTCC 680
Query 611 TGCTCCGCTTTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTA-TACTACATTCTA 669
|||||| | |||||||||||||||||||||| || ||||| || | | | || ||||
Sbjct 681 TGCTCCACGCCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTC-ACTGTTGCACTCTA 739
Query 670 GGCCTAAATCAACTGTTGGAACTCCAGCTTACATAGCACCTGAAGTTCTTTCACG-GAGA 728
||| ||||||||||||||||||||||| || || |||||||| |||||||| || | ||
Sbjct 740 TGCCCAAATCAACTGTTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCG-GA 798
Query 729 GAATATGATGGCAAGCACG-CGGATGTGTGGTCATGTGGAGTAACCCTTTATGTGATGCT 787
|| |||||||||||| | | | ||||| ||||| ||||| || || |||||||| |||||
Sbjct 799 GAGTATGATGGCAAG-ATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCT 857
Query 788 GGTGGGAGCTTACCCGTTTGAGGACCCTA-ATGATCCAAAAAACTTCAGGAAAACAATCC 846
||||||||| ||||| ||||| |||| | | ||||| |||||||||| |||||||| |
Sbjct 858 GGTGGGAGCATACCCATTTGAAGACCA-AGAGGATCCTAAAAACTTCAAAAAAACAATAC 916
Query 847 AGCGCATAATGGCTGTACAA-TACAAGATCCCGGACTATGTTCACATATCTCAGGA-AT- 903
| | ||||||||||| ||| |||||||||||||||||||| | ||||||||| | ||
Sbjct 917 AAAGAATAATGGCTGT-CAAGTACAAGATCCCGGACTATGT-C-CATATCTCACAAGATT 973
Query 904 GCAAACATCTTCTCTCTCGCATATTCGTCACTAACTCTGC-TAAGAGAATCACACTTAAG 962
|||||||||| ||||| || ||||| ||| | ||||| | |||||| || | | || |
Sbjct 974 GCAAACATCTCCTCTCCCGTATATTTGTCGCCAACTC-GAATAAGAGGATTA-AGATA-G 1030
Query 963 --GAGATCAAGAATCATCCGTGGTACTTGAAGAATTTGCCAAAGGAGCTG-CTAGAGTCG 1019
||||||||||| ||||| |||| | | ||||| |||||| ||| || | ||| |
Sbjct 1031 CTGAGATCAAGAAACATCCATGGTTCCTAAAGAACCTGCCAAGGGAACTTAC-AGAAACA 1089
Query 1020 GCTCAAGCGGCGTA-TT-AC-AAGAGAGA-CACAAGC-TTCTCTCTTCAAAGCGTAGAGG 1074
|||||||| | || || | || ||||| | | | | ||||| || ||||| || || |
Sbjct 1090 GCTCAAGCTGTATACTTCAGTAA-AGAGAACCCGA-CATTCTCGCTCCAAAGTGTCGAAG 1147
Query 1075 ACATAATGAAGATAGTTGGA-GAAGCAAGGAA-TCCAGCTCC 1114
| || |||||||| || ||| || |||| || |||||||||
Sbjct 1148 AGATCATGAAGATTGT-GGAAGAGGCAAA-AACTCCAGCTCC 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5