BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08640.1
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487705 jgi|Araly1|487705|fgenesh2_kg.6__839__AT5G08640.1 1784 0.0
Ahg918141 jgi|Araly1|918141|Al_scaffold_0008_2892 270 2e-71
> Ahg487705 jgi|Araly1|487705|fgenesh2_kg.6__839__AT5G08640.1
Length=1241
Score = 1784 bits (966), Expect = 0.0
Identities = 1084/1140 (95%), Gaps = 11/1140 (1%)
Strand=Plus/Plus
Query 5 TACATATCCGCCATTGTTTCCGGCAACGCAAAC--TACCaaaaaaaaTAATGGAGGTCGA 62
||||||||||||||||||||||||| || |||| |||| ||||| |||||||||||
Sbjct 1 TACATATCCGCCATTGTTTCCGGCACCGAAAACTATACC--AAAAAGCCATGGAGGTCGA 58
Query 63 AAGAGTCCAAGACATTTCATCTTCTTCTCTACTAACAGAAGCAATCCCGTTGGAGTTCAT 122
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 59 AAGAGTCCAAGACATTTCATCTTCTTCTCTACTAACCGAAGCGATCCCGTTGGAATTCAT 118
Query 123 CAGATCAGAGAAAGAACAACCAGCGATCACAACATTCCGAGGTCCAACGCCGGCGATTCC 182
|||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 119 CAGATCGGAAAAAGAACAACCGGCGATCACAACATTCCGAGGTCCAACGCCGACGATCCC 178
Query 183 CGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAGGCGCGCGGTGGTGAAAGCGAG 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 CGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAGGCGTGCGGTGGTGAAAGCGAG 238
Query 243 TGAAGAATGGGGGCTATTCCAAGTGGTTAACCACGGGATTCCGACGGAGCTGATACGACG 302
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 239 TGAAGAATGGGGGCTTTTCCAAGTTGTTAACCACGGGATTCCGACGGAGCTGATACGGCG 298
Query 303 TTTACAAGACGTCGGAAGAAAATTCTTCGAGCTTCCTTCGTCGGAGAAAGAATCCGTCGC 362
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTACAGGACGTCGGAAGAAAATTCTTCGAGCTTCCTTCGTCGGAGAAAGAATCCGTCGC 358
Query 363 TAAACCGGAAGATTCGAAAGACATTGAAGGATACGGAACAAAGCTTCAGAAAGATCCAGA 422
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAACCGGAAGATTCAAAAGACATTGAAGGATACGGAACAAAGCTTCAGAAAGATCCAGA 418
Query 423 AGGTAAAAAAGCTTGGGTCGATCATCTCTTCCATCGAATCTGGCCACCGTCATGCGTCAA 482
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 AGGTAAAAAAGCTTGGGTCGATCATCTCTTCCACCGAATCTGGCCACCGTCATGCGTCAA 478
Query 483 TTACAGATTCTGGCCTAAGAATCCACCTGAATACAGGGAGGTGAATGAAGAGTATGCAGT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CTACAGATTCTGGCCTAAGAATCCACCTGAATACAGGGAGGTGAATGAAGAGTATGCAAT 538
Query 543 GCATGTGAAGAAGCTATCGGAGACGTTATTAGGGATTCTCTCGGATGGATTAGGGTTAAA 602
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 GCAAGTAAAGAAGCTATCGGAGACGTTATTAGGGATTCTCTCGGAAGGATTAGGGTTAAA 598
Query 603 GCGTGATGCGTTGAAAGAAGGTCTCGGCGGAGAGATGGCGGAGTATATGATGAAGATTAA 662
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGTGACGCGTTGAGAGAAGGTCTCGGCGGAGAGATGGCGGAGTATATGATGAAGATTAA 658
Query 663 CTATTATCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGGTGTACCGGCTCATACAGATCT 722
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TTATTACCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGGTGTACCGGCGCATACAGATCT 718
Query 723 CAGTGGAATCACTCTTCTTGTTCCTAACGAAGTTCCTGGACTTCAAGTTTTCAAAGATGA 782
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 CAGTGGAATCACTCTTCTTGTTCCCAACGAAGTTCCTGGACTTCAAGTTTTCAAAGATGA 778
Query 783 TCACTGGTTCGATGCAGAGTATATTCCCTCCGCCGTCATTGTTCACATCGGCGATCAGAT 842
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 TCATTGGTTCGATGCAGAGTATATTCCCTCCGCCGTCATTGTTCACATTGGCGATCAGAT 838
Query 843 TCTGAGGTTGAGTAATGGGAGGTATAAAAATGTGTTGCATAGGACGACGGTGGATAAAGA 902
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TCTGAGGCTGAGTAATGGGAGGTATAAGAATGTGTTGCATAGGACGACGGTGGATAAAGA 898
Query 903 GAAGACGAGGATGTCGTGGCCGGTTTTCTTGGAGCCTCCCCGTGAAAAGATTGTTGGACC 962
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 899 GAAGACGAGGATGTCGTGGCCGGTTTTCTTGGAGCCTCCCCGTGAAAAGATCGTCGGACC 958
Query 963 TTTACCGGAACTAACCGGAGATGATAATCCTCCAAAGTTTAAACCGTTTGCTTTCAAGGA 1022
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 TTTACCGGAGTTAACCGGAGATGATAATCCTCCAAAGTTTAAACCTTTTGCTTTCAAGGA 1018
Query 1023 TTACAGTTACCGCAAGCTCAATAAACTTCCTCTGGATTGA-GAAAAATCAATACGA-GAA 1080
|||||||||||||||||||||||||||||||||||||||| ||||| |||| || | ||
Sbjct 1019 TTACAGTTACCGCAAGCTCAATAAACTTCCTCTGGATTGAAGAAAA-TCAAAACCAAGA- 1076
Query 1081 G-AATAATTTGTGGTTGTGGAATAGGAAGTGGTTCGTTATTGAGTTGTTGTTTTCCCGCG 1139
| || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GTAA-AATTTGTGGTTGTGGAAAAGGAAGTGGT-CGTTATTGAGTTGTTGTTTTCCCGCG 1134
Score = 178 bits (96), Expect = 1e-43
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1215 GACATGTTTTTATTGTGTTGCGATGCCTTTGCAAGTTATGTCGGACCATTTTTAGGCATT 1274
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 GACATGTTTTTATTGTGTTGCGAAGCCTTTGCAAGTTATGTCGGACCATTTTTAGGCATT 1193
Query 1275 GGAAAGAGTAGGTTTGTATTTTGTAAATTTTTAACCTGTCACGGaaaa 1322
|||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1194 GGAAAGAGTAGGTTTGTATTTTGTAAATTTTTTACCTGTTACGGGAAA 1241
> Ahg918141 jgi|Araly1|918141|Al_scaffold_0008_2892
Length=1035
Score = 270 bits (146), Expect = 2e-71
Identities = 627/849 (74%), Gaps = 73/849 (9%)
Strand=Plus/Plus
Query 178 ATTCCCGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAG-GCGCGCGGTGGTGAA 236
||||||||||| |||||||||| | | |||||||| |||| | ||| |||||||||||
Sbjct 154 ATTCCCGTCGTTGATCTAAGCGCTTCTGACGAAGAGCTCGTG-GTGCGTGCGGTGGTGAA 212
Query 237 AGCGAGTGAAGAATGGGGGCTATTCCAAGTGGTTAACCACGGGATTCCGACGGAGCTGAT 296
|||||||||||||||||| | || || |||||||||||||| ||||| || ||||||||
Sbjct 213 AGCGAGTGAAGAATGGGGAATTTTTCAGGTGGTTAACCACGGAATTCCCACTGAGCTGAT 272
Query 297 AC-G-ACGTTTACAAGACGTCGGAAGAAA-A-TTCTTCGAGCTTCCTTCGTCGGAGAAAG 352
| | | | | |||| || || |||| | || ||||| || || | |||| ||||
Sbjct 273 GCAGCA-GCTG-CAAGTGGTTGG--GAAACAGTTTTTCGACCTCCCAGAGGCGGAAAAAG 328
Query 353 AATCCGTCGCTAAACCGGAAGATTCGAAAGACATTGAAGGATACGGAACAAAGCTTCAGA 412
|| | || || ||| | | | ||| ||| ||||||||||| || | | ||
Sbjct 329 AAGCTGTGGCGAAA--G-A-G----GAA-GACTTTGAAGGATAC--AAGA--G-----GA 370
Query 413 AAGATCCAGAAGGTAAAAAAGCTTGGGTCGATCATCTCTTCCATCGAATCTGGCCACCGT 472
| ||| ||||||| ||| ||||||| ||| ||||| || ||| ||||||||||||| |
Sbjct 371 ACTATCTTGAAGGTATAAAGGCTTGGGACGAACATCTGTTTCATAGAATCTGGCCACCCT 430
Query 473 CATGCGTCAATTACAGAT-TCTGGCCTAAGAATCCACCT-GAATACAGGGAGGTGAATGA 530
||||| | ||||| | || | ||| |||||||||| ||| || || ||||| ||||||||
Sbjct 431 CATGCATTAATTATAAATAT-TGGTCTAAGAATCCTCCTCGA-TATAGGGAAGTGAATGA 488
Query 531 AGAGTATGCA-GTGCATGTGAAGAAGCTATCGGAGACG-TTATTAG--GGATTCTCTCGG 586
|| ||| || | |||| ||||||||||| | |||| || || | || || || |
Sbjct 489 GGAATATACAAG-GCATATGAAGAAGCTAACAGAGAAAATTCTTGGTTGG-TTATCA-G- 544
Query 587 ATGGATTAGGGTTAA-AGCGTG-ATGCGTTGA--AAGAAGGTCTCGGCGGAGAGATGGCG 642
| ||| |||||||| | | || | ||||||| || ||| | | || || || |||||
Sbjct 545 AGGGACTAGGGTTACCACC-TGCA-GCGTTGACGAA-AAGTT-TAGGTGGCGAAATGGCA 600
Query 643 GAGTATATGATGAAGATTAACTAT-TATCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGG 701
|||||| |||| | | | || | | |||||||||| ||| |||| ||||| |||||
Sbjct 601 GAGTATGTGATTAGGGTCAATT-TCTATCCGCCGTCTCCAAAATCGGAATTAGCCTTAGG 659
Query 702 TGTACCGGC-T-CATACAGATCTCAG-TGGAATCACTCTTCTTGTTCCTAACGAAGTTCC 758
| ||| | | || || ||| | || || |||||| ||||| || || || || |||||
Sbjct 660 AG--CCGCCGTGCACACCGATAT-AGGTGCAATCACACTTCTAGTCCCCAATGAGGTTCC 716
Query 759 TGGACTTCAAGTTTTCAAAGATGATCACTGGTTCGATGCA-GAGTATATTCC-CTCCGCC 816
|||||||||||| ||||| || || || ||||| ||| | |||||||| | ||||||
Sbjct 717 TGGACTTCAAGTCTTCAAGGACGAACAATGGTTGGAT-CTTGAGTATAT-CAACTCCGCT 774
Query 817 GTCATTGTTCA-CATCGGCGATCAGATTC-TGAGGTTGAGTAATGGGAGGTATAAAAATG 874
|| ||||| | ||| |||||||| | || ||||| |||| || |||||||| ||||| |
Sbjct 775 GTGGTTGTT-ATCATTGGCGATCA-ACTCATGAGGATGAGCAACGGGAGGTACAAAAACG 832
Query 875 TG-TTGCATAG-GACGACGGTGGATAAAGAGAAGACGAGGATGTCGTGGCCGGTTTTC-T 931
| || ||||| | | || ||||||| || || |||||| | |||||||||||| |
Sbjct 833 TACTT-CATAGAG-CAACATTGGATAAGGAAAATTTGAGGATTTTGTGGCCGGTTTTTGT 890
Query 932 TGGAGCCTCCCCGTGAAAAGATT-GTTGGACCTTTACCGGAACTAACCGGAGATGATAAT 990
|| |||| | ||| | || || |||||||| ||||| || || ||||| || |||
Sbjct 891 TGC-GCCTAAGCATGATTTG-TTCGTCGGACCTTTGCCGGAGCTTACTGGAGACGAGAAT 948
Query 991 CCTCC-AAA 998
||||| |||
Sbjct 949 CCTCCCAAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49902898353
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5