BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08660.1
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487707 jgi|Araly1|487707|fgenesh2_kg.6__841__AT5G08660.1 3345 0.0
> Ahg487707 jgi|Araly1|487707|fgenesh2_kg.6__841__AT5G08660.1
Length=2106
Score = 3345 bits (1811), Expect = 0.0
Identities = 2023/2124 (95%), Gaps = 19/2124 (1%)
Strand=Plus/Plus
Query 180 ATGGGGAGTTTTTGCTCCAAGAGCCTTGGAATCAATTTTGGCAGCGAGTATTCTGGTTCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGGAGTTTTTGCTCCAAGAGCCTTGGAATCAATTTTGGCAGCGAGTATTCAGGTTCA 60
Query 240 AGTGTGGCTGATGATGGTCGAGAACCTGATTTTGGCCACTCACAACCAAATGGGCAAACC 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 AGTGTGGCTGATGATGGTCGAGAACCTGATTTTGGCCACCCACAACCAAATGGACAAACC 120
Query 300 AGTTTGATTGTTCCTGGTATGAGGCAGCTTATGGTTAAAGACGTCAAGGAACAAAATCAA 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 AGTTTGATTGTTCCTGGTATGAGGCAGCTTATGGTTAAAGACGTTAAGGAACAAAACCAA 180
Query 360 TTAAAAGATGTTTTCTCTTTCCGCGAAAGGGAAGCTGAAGATAATTTCTATGATGGAATT 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 181 TTAAAAGATGTTTTCTCTTTCCGCGAAAGGGAAACTGAAGATAATTTCTATGATGGGATT 240
Query 420 CCGACGTATACTATGGCTCCATCACAGAAAATTCGGTCTGCAAAATCAACTCAAACCGCT 479
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 CCGACGTATACCATGGCTCCATCACAGAAAATCCGGTCTGCAAAATCAACTCAAACCGCA 300
Query 480 GTTTCAAAGGTTACAGAGGCAAGTAAGCTTTTAGGCAAAGCGGGGTTAGGTAGAGCAAAA 539
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 GTTTCAAAGGTTACAGAGGCAAGTGTGCTTTTAGGCAAAGCGGGGTTAGGTAAAGCAAAG 360
Query 540 GATGTTTTGGATACCCTTGGAAGTAGCATGACAGATCTTAGTAGCGGTGGATTTACTTCT 599
|||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||
Sbjct 361 GATGTTTTGGATACCCTTGGGAGTAGCATGACGGATCTTAGCAGTGGTGGATTTACTTCT 420
Query 600 GGAGTTGCAACTAAAGGCAATGAACTTGGGATCTTAGCTTTTGAAGTAGCAAACACAATT 659
||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 421 GGAATAGCAACTAAAGGCAATGAACTCGGGATCTTATCTTTTGAAGTAGCAAACACAATT 480
Query 660 GTCAAAAGCTCAAATCTCATTGAATCCCTTTCTAAGAGGAACATCGAGCATTTAAAAGGA 719
|| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 481 GTTAAAAGCTCAAATCTCATTGATTCTCTTTCTAAGAGGAACATCGAGTATTTAAAAGAA 540
Query 720 ACTATCCTTTATTCTGAGGGTGTTCAAAACCTAGTCTCGAATGATTTCGATGAACTACTC 779
||| |||||| ||| |||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 541 ACTGTCCTTTGTTCCGAGGGTGTTCAAAATTTAGTCTCGAATGATTTCCATGAACTCCTC 600
Query 780 AGACTTGTTGCAGCTGATAAGAGGCAGGAGCTGCAAGTTTTCTCGGGGGAAGTGGTTCGG 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AGACTTGTTGCAGCTGATAAGAGGCAGGAGCTGCAAGTTTTCTCGGGAGAAGTGGTTCGG 660
Query 840 TTTGGAAACCGATCCAAAGATTTTCAGTGGCATAATTTACAGCGCTATTTCGATAGGATC 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTGGAAACCGATCCAAAGATTTTCAGTGGCATAATTTACAGCGCTATTTCGATAGGATT 720
Query 900 AGCAAAGAATTAACCCCTCAAAGGCAGTTAAAGGAAGACGCGGTGTTGGTTGTTGACCAA 959
|||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |||
Sbjct 721 AGCAAAGAATTAACTCCTCAAAGGCAATTAGAGGAAGACGCGGTGTTGATTGTTGATCAA 780
Query 960 CTGATGGTTCTAGTGCAGTATACTGCTGAACTATACCAAGAACTCCAAGTATTGTATCGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTGATGGTTCTAGTGCAGTATACTGCTGAACTATACCAAGAACTCCAAGTATTGTATCGA 840
Query 1020 TTGGAGAAAGACTATGAGCAAAAGCGTCGAGAAGAAGAGAACTCAGCTAATAGCAGTAAG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TTGGAGAAAGACTATGAGCAAAAGCGTCGAGAAGAAGAGAACTCAGCTAACAGCAGTAAG 900
Query 1080 GGTGATGGCCTTGCAATCTTAAAAACGGAACTTAAAGCCCAGAGAAAGGTAGTGAAAAGC 1139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 GGTGATGGCCTTGCAATCTTAAAAACGGAACTTAAAGCCCAGAAAAAGGTAGTGAAAAGC 960
Query 1140 TTAAAGAAAAAGTCGTTGTGGTCCAGAGGTTTTGAAGAGGTGATGGAGAAACTAGTAGAC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTAAAGAAAAAGTCGTTGTGGTCCAGAGGTTTTGAAGAGGTGATGGAGAAACTAGTAGAC 1020
Query 1200 ATTGTACATTTCTTGTTGCTAGAGATTCATAATATCTTCGGTGGTGCCGATGATCAACCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTGTACATTTCTTGTTGCTAGAGATTCATAATATCTTCGGTGGTGCCGATGATCAACCA 1080
Query 1260 TCGAAGAAAGGAGCTGCAGAATATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACAT 1319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCGAAGAAAGGAGCTGCAGATTATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACAT 1140
Query 1320 TATGCAAATATAATTGTGCAGATTGACACACTTGTCGCTCGTGCAAGCTCTATAACTTCA 1379
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1141 TATGCAAATATAATTGTGCAAATTGATACACTTGTCGCTCGTGCAAGCTCTATAACTTCA 1200
Query 1380 AATGCAAGGGATTCTCTTTACCAAAGCTTACCACCTGGTATAAAATTGGCTCTTCGTTCC 1439
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 AATGCAAGGGATTCTCTGTACCAAAGCTTGCCACCTGGTATAAAATTGGCTCTTCGTTCC 1260
Query 1440 AAGATTAAATCTTTCAATGTCGATAAGGAGCTTTCGGTTACACAAATTAAGGATGAGATG 1499
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAGATAAAATCTTTCAATGTCGATAAGGAGCTTTCGGTTACACAAATTAAGGATGAGATG 1320
Query 1500 GAGAGGACACTGCATTGGCTTGTCCCTGTTGCAGGCAATACAACAAAAGCGCATCATGGT 1559
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1321 GAGAGGACACTGCATTGGCTTGTCCCTGTTGCAGGCAATACCACAATAGCGCATCATGGT 1380
Query 1560 TTTGGCTGGGTTGGAGAGTGGGCAAATACAGGGACTGATTTCACTAGTAAGCCTAGTGGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTTGGCTGGGTTGGAGAGTGGGCAAATACAGGGACTGATTTCACTAGTAAGCCTAGTGGT 1440
Query 1620 GGAGATATACTACGTATTGAAACACTCTATCACGCTAGTAAAGAAAAGACAGAGATCTAC 1679
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGAGACATACTACGTATCGAAACACTCTATCACGCTAGTAAAGAAAAGACAGAGATCTAC 1500
Query 1680 ATTCTTGGACAGATAATTTGGTTACAACATTTGGTTACAAAAGCTAAGAGCGACGCTCGA 1739
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 ATTCTTGGACAGATAATTTGGTTACAACATTTGGTTACAAAAGCGAAGAGCGACGCTCGA 1560
Query 1740 GGAGGTCCTAGACTTTCTTCTATCAAGTCTCCATTGGATACTACGAACCAGCAATTGATA 1799
|||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||
Sbjct 1561 GGAGTTCCTAGACTTTCTTCTATCAAGTCTCCATTGAATACTACAAACCAGCAAATAATA 1620
Query 1800 TCTGAACCACTCAGTGTCCCAATAGTAACAGATGAGGAGCAAAAGATGTTACAAGAGGCA 1859
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1621 TCTGAACCACTCAGTGTCCCATTAGTAACAGATGAGGAGCAAAAGCTGTTACAACAGGCA 1680
Query 1860 AGCA-AGAGAAAGAGAACTCCATGTGTTAGCAAGAGTCAGGATTTTGATTCTGAGTACTC 1918
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1681 AGCACA-AGAAAGAGAACTCTATGTGTTAGCAAGAGTCAGGATTTTGATTCTGAGTACTC 1739
Query 1919 GCGGGCAAGAAAGTGTGACCCTTTGAGCAAAAGCAGTGAGTATTTTCGTGGAGTGAGAAG 1978
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 ACGGGCAAGAAAGTGCGACCCTTTGAGCAAAAGCAGCGAGTATTTTCGTGGAGTGAGAAG 1799
Query 1979 AAGCAAATCAGCTGCAGTAAAGCGGTATTCTTCGGGTTTTCCGCTTCTTGACTTTGCTAT 2038
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1800 AAGCAAATCAGCTGCAGTGAAGCGGTATTCTTCAGGTTTTCCGCTTCTTGACTTTGCTAT 1859
Query 2039 TGACAAGGAAAAAGTGTTGGATGTGATCGATCGGGTTGATGTGCCAAGAGATTATAAAGC 2098
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
Sbjct 1860 TGACAAGGAAAAAGTGTTGGATGTGATAGATCGGGTCGATGTGCCAAGAGATCATAAAAC 1919
Query 2099 ATTGTTAAAAGAAGGTAGCTTGAGCTTCTAATGGAGAGTTGTGTGTTTTGTAGGGTCTCT 2158
||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1920 ATTGTTAAAAGAAAGTAGCTTGAGCTTCTAATGGAGAGTTGTGTGT----------C-C- 1967
Query 2159 GCCAAAGCACAGAACCGGCTTCTGATTCATACATGTTTGGTTGTGTATATAAGAGCATAA 2218
|| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1968 ---AATGCACAAAACCGGCTTCTGATTCATACTTGTTTGGTTGT--ATATAAGAGCATAA 2022
Query 2219 AAGAAAGGGTATGGAAGAAGCTGTAATGTGACGTAATGTTGTTAGATCATTTGCAATATT 2278
|||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 2023 GAGAAAGGGTATGGAAGGAGCTATAATGTGACGTCATGTTATTAGATCATTTGCAATATT 2082
Query 2279 TCAATATAGTGATACATTTTCAGG 2302
||||||||||||||||||||||||
Sbjct 2083 TCAATATAGTGATACATTTTCAGG 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5