BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G08695.1
Length=2643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890214 jgi|Araly1|890214|Al_scaffold_0007_2200 1594 0.0
Ahg893015 jgi|Araly1|893015|Al_scaffold_0006_1011 1526 0.0
Ahg349841 jgi|Araly1|349841|fgenesh1_pg.C_scaffold_6000434 1445 0.0
> Ahg890214 jgi|Araly1|890214|Al_scaffold_0007_2200
Length=2367
Score = 1594 bits (863), Expect = 0.0
Identities = 1363/1600 (85%), Gaps = 51/1600 (3%)
Strand=Plus/Plus
Query 805 CAGTGATGATGTTCTTGACGCTGGTCGCCTTTTCGTCCATGGCCTGCCTTACTCTACCAC 864
||||||||||||||| ||| |||||||||||||||||| | |||||||||| || | ||
Sbjct 771 CAGTGATGATGTTCTGGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC 830
Query 865 AGAAGAAGAGCTTATGGAACATTTCAGCAAATTCGGTGATATATCAGAGGTCCATCTTGT 924
|||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 831 AGAAGAAGAGCTTATGGAACATTTTAGCAAATTTGGTGAGATATCAGAAGTCCATCTTGT 890
Query 925 TCTTGACAAGGATACCAGAAGTTGCAGGGGAATGGCCTTCGTCCTTTACCTGATACCGGA 984
|||||||||||| || | ||| | ||||||||| |||| | ||||||||| ||| |||||
Sbjct 891 TCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCCGATTCCGGA 950
Query 985 ATCTGCAAAAATGGCAATGGATAAATTAGATAAGTTACCTTTCCAGGGCCGGACGTTGCA 1044
|| ||| || ||||||||| |||||||||| | | ||| ||||||||| ||||||
Sbjct 951 ATGTGCGGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCA 1010
Query 1045 TATTTTACCAGCTAAGCCCCGTGCAATGTCTGCTAAACAAGTAG-ATAACTCCTCTAATC 1103
| |||| ||||| |||| ||||| || |||| ||||||||| | || || | ||||| |
Sbjct 1011 TGTTTTGCCAGCCAAGCACCGTGAAACATCTGATAAACAAGT-GAATGACACTTCTAACC 1069
Query 1104 TGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGGCGTCTGAAGCTTGTGGA 1162
|||||||| | |||||| ||| |||| ||||||||||| ||||| ||||||||| |||||
Sbjct 1070 TGCCAAAAACTTTCAAGCAAA-AGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGA 1128
Query 1163 AACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAAAACTTAGTC 1222
|| ||||| |||||||| ||||| |||||||||||||||||||| || |||||| |||||
Sbjct 1129 AATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTC 1188
Query 1223 A-GGTCGTATGGTGTAA-CAAAGAGTGAGTTACTTGACCGTGAATGC-GAAGATCCTGCA 1279
| ||| ||||||||||| | ||||||||| |||||||||||||| || |||||||||||
Sbjct 1189 AGGGT-GTATGGTGTAAGC-AAGAGTGAGCTACTTGACCGTGAA-GCTGAAGATCCTGCT 1245
Query 1280 GTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAGAAGCCCTTGCTAAA 1339
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1246 GTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCTAAA 1305
Query 1340 GCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGACGTGAAGAAC 1399
||||||||| ||| || |||||||||||||||||| || |||| ||||| | ||| |||
Sbjct 1306 GCTGGAGTAAATGTTACTTCTTTGGAAGAATTTGCTACAAGGAATGGTGATGAGAATAAC 1365
Query 1400 AGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCACTGAAAAGGAACTG 1459
||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 1366 CGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTG 1425
Query 1460 GCTCAAATGTTTCGGAA-ATTTGGAAGTCTAGACAAAATTGTTCTCCCTCCGACTAAGAC 1518
|||||||||||| |||| |||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1426 GCTCAAATGTTT-GGAAGATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGAC 1484
Query 1519 GATGGCTTTGGTTGT-TTTCCTTGAAGC-GGCTGAGGCACGTGCAGCTATGAACGGATTG 1576
|||||| |||||||| |||| |||| || |||||||||||| |||||| | || ||| ||
Sbjct 1485 GATGGCCTTGGTTGTGTTTC-TTGA-GCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATG 1542
Query 1577 GCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTCGAGATATTCTT 1636
|||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1543 TCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTT 1602
Query 1637 GAGCCAAAAGCACTTGCC-GATAACAAAGAAAAGAAGAGTGCTGTCGAAGAAAATGATGC 1695
||||||||| | ||| || || ||||| ||| ||||||||| ||| | ||||| || |
Sbjct 1603 GAGCCAAAAACTCTT-CCTGACAACAATGAAGAGAAGAGTGATGTTGCAGAAATTGGCGT 1661
Query 1696 GAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCGAGTCAAATGT 1755
||||||||||||||| || |||||||||| |||| || | ||| |||| |||||||||||
Sbjct 1662 GAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGT 1721
Query 1756 CCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGAAGCATTTGAC 1815
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1722 TCTTCATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTGAC 1781
Query 1816 TGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAA-G-A-G-ACTGGA 1871
| | |||||||||||||||||||||| ||||| ||| | |||||| | | | | | |
Sbjct 1782 TAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCAAG-A--TAATAAAGCATGTAAAGAA 1838
Query 1872 CGAGACG--TCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAGCGAC 1929
| || || ||| || |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1839 TGGGAAAAATCTTTCGAGAGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCAC 1898
Query 1930 CAGTGTCTACAGAGATCTACCAGGAAA-TGTTCTGGATGGGCATTCTTTGATCTTGA-AT 1987
|| ||||||||||||| ||| ||| || |||||||||||||||| |||||||||||| ||
Sbjct 1899 CAATGTCTACAGAGATTTAC-AGGGAACTGTTCTGGATGGGCATGCTTTGATCTTGAGAT 1957
Query 1988 TTTTCTGAAAACAAGCGGAGTGA-AACGGTTGGGGAAGGTTCAGACAAGGTCACAAAG-T 2045
| | |||||||||||||||||| || || |||| ||| ||||| ||||| ||||| |
Sbjct 1958 TCTG-TGAAAACAAGCGGAGTGACAA-GGCTGGGAAAGATTCAGGCAAGG--ACAAACCT 2013
Query 2046 TGG-CAAAGTTACATGTGAAAAATGTAGCTTTTGAAGCAACCAAGAAAGAACTAAGACAG 2104
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2014 TCTACAAAGTTACATGTGAAAAATGTAGCTTTTGAGGCAACCAAGAAAGAACTAAAACAG 2073
Query 2105 CTTTTCAGTCCATTTGGACAGATTCAAGAG-AGTTG-GGCTTCCATTGAAGAATGT-GAG 2161
|| |||||||||||||||||||| |||||| | | | |||||||| || |||| | |||
Sbjct 2074 CTATTCAGTCCATTTGGACAGAT-CAAGAGTA-T-GAGGCTTCCAAAGAGGAATATCGAG 2130
Query 2162 AAAATACGCTGGTTATGCTTTTGTAGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAA 2221
|| || ||||||| ||| ||||| ||||| | ||||| ||||||||| |||||||||||
Sbjct 2131 CAA-TATGCTGGTTTTGCGTTTGTTGAATTCGTGACAAAGCAAGAAGCCTTAAACGCTAA 2189
Query 2222 AAAGGCACTCTCCAACACCCATTTCTATGGACGCCATTTGGTGCTCGAGTGGGCTCGT-G 2280
||| ||| | ||| |||||||||||| |||||||||||||||||||||||||| | |
Sbjct 2190 AAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGGTGCTCGAGTGGGC-CAACG 2248
Query 2281 ATGACGAGAGCATGGAAGCGATTCAAAAATC-TTGTGCTGCCAAGTATATGGGCCAAGAA 2339
||||| | |||||||||||||| || || | || ||||| |||| | || | |||||
Sbjct 2249 ATGACAATAGCATGGAAGCGAT-CAGGAAGCGTTCCGCTGCTAAGT-T--GGACGAAGAA 2304
Query 2340 AACGATAATCCAAAGAAAAGGAAAAGCTCGACAGTTGTTG 2379
|| |||||| ||||||||||||||||||||| ||||||||
Sbjct 2305 AATGATAATGCAAAGAAAAGGAAAAGCTCGAAAGTTGTTG 2344
Score = 87.9 bits (47), Expect = 3e-16
Identities = 110/137 (80%), Gaps = 17/137 (12%)
Strand=Plus/Plus
Query 553 CAATGGTGCTGATGACCCTAACAAAGC-CAAAAGATCATTCTTAGATTCTAAAAAGACTA 611
|||||||||||| | ||||| ||||| ||||| ||| || | ||| | |||||||||
Sbjct 429 CAATGGTGCTGA-G--CCTAAGAAAGCTAAAAAG-TCA-TC-T-GATACCGAAAAGACTA 481
Query 612 GAAAGAGTAAAGTTG--G-T------GATGATGTTTCTGATATGGAATACTTCAAGAGTC 662
|||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 482 AAAAGAGCAAAGTTGTTGCTGCCAGCGATGATGTTTCTGATATGGAATACTTCAAGAGTA 541
Query 663 GGATAAAGAAAAATCTG 679
|| | ||||||||||||
Sbjct 542 GGGTTAAGAAAAATCTG 558
> Ahg893015 jgi|Araly1|893015|Al_scaffold_0006_1011
Length=2238
Score = 1526 bits (826), Expect = 0.0
Identities = 925/971 (95%), Gaps = 14/971 (1%)
Strand=Plus/Plus
Query 1087 AGATAACTCCTCTAATCTGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGG 1145
||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1014 AGATAACTCTTCTAATCTGCCAAAATCATTCAAGCAAA-AGAGGGAGGAACAAAGGAAGG 1072
Query 1146 CGTCTGAAGCTTGTGGAAACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTA 1205
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1073 CGTCTGAAGCTTGTGGAAACACAAAGGCTTGGAACAGTTTCTTCATGCGACCCGATACTA 1132
Query 1206 TCCTGGAAAACTTAGTCAGGTCGTATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAAT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TCCTGGAAAACTTAGTCAGGTCGTATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAAT 1192
Query 1266 GCGAAGATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAG 1325
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 GCGAAGATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAG 1252
Query 1326 AAGCCCTTGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAG 1385
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1253 AAGCCCTTGCTAAAGCTGGAGTACGTGTCGCCTCTTTGGAAGAATTTGCTGCACGGAAAG 1312
Query 1386 GTGACGTGAAGAACAGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCA 1445
|||| | |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct 1313 GTGATGAGAAGAACAGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCA 1372
Query 1446 CTGAAAAGGAACTGGCTCAAATGTTTCGGAAATTTGGAAGTCTAGACAAAATTGTTCTCC 1505
||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 1373 CTGAAAAGGAACTGGCTCAAATGTTCCGAAAATTTGGAAGTCTTGACAAAATTATTCTCC 1432
Query 1506 CTCCGACTAAGACGATGGCTTTGGTTGTTTTCCTTGAAGCGGCTGAGGCACGTGCAGCTA 1565
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1433 CTCCGACGAAGACGATGGCTTTGGTTGTTTTCCTTGAACCGGCTGAGGCACGTGCAGCTT 1492
Query 1566 TGAACGGATTGGCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTC 1625
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 TGAACGGAATGGCATACAAGCGTTACAAAGATGTTCCCCTGTATCTGGAGTGGGCTCCTC 1552
Query 1626 GAGATATTCTTGAGCCAAAAGCACTTGCCGATAACAAAGAAAAGAAGAGTGCTGTCGAAG 1685
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1553 GAGATATTCTTGAACCAAAAGCACTTGCCGATAACAAAGAAGAGAAGAGTGCTGTTGAAG 1612
Query 1686 AAAATGATGCGAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCG 1745
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 1613 AAAATGATGCGAGAAGAGTCAACCTGGATCAGCAGGTTGGAATCTATTCGGATATAGCCG 1672
Query 1746 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGA 1805
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1673 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 1732
Query 1806 AGCATTTGACTGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAAGAG 1865
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1733 AGCATTTGACTGGACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAG-A--TAATAAGAG 1789
Query 1866 ACTGGACGAGACGTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1925
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 ATTGGAAGAGACGTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1849
Query 1926 CGACCAGTGTCTACAGAGATCTACCAG--GA---AA-TGTTCTGGATGGGCATTCTTTGA 1979
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1850 CGACCAGTGTCTACAGAGATCTACCAGTAGAGGGAAATGTTCTGGATGGGCATTCTTTGA 1909
Query 1980 TCTTGAATTTTTCTGAAAACAAGCGGAGTGAAACGGTTGGGGAAGGTTCAGACAAGGTCA 2039
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1910 TCTTGAGTTATTCTGAAAACAAGCGGAGTGAAACGGTTGGGGAAGGTTCAGACAAGATCA 1969
Query 2040 CA-A-AGTTGG 2048
| | ||||||
Sbjct 1970 -AGAGAGTTGG 1979
Score = 1064 bits (576), Expect = 0.0
Identities = 853/976 (87%), Gaps = 61/976 (6%)
Strand=Plus/Plus
Query 157 GTCAAGGATAATCGTTAAGAATGTTCCCAAATATGTGACAGAGGATCAACTACGAGGTAT 216
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 GTCTAGGATAATCGTTAAGAATGTTCCCAAATATGTGACAGAGGATCAACTACGAGGTAT 74
Query 217 CTTTTC-GGAAAAAGGAGAAATCACAGACGTGAAATTGAAGCGTTTAAGTGATGGCAGAA 275
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 75 CTTTTCACG-AAAAGGAGAAATCACAGACGTGAAATTGAAGCGTTTAAGTGATGGCACAA 133
Query 276 GTAGACAATTTGCTTATATTGGATTTCGTAGTGAACAAAAAGCTCAAGATGCTATCACTT 335
|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 134 GTAGACAATTTGCTTATATTGGATTTCGTAATGATCAAGAAGCTCAAGATGCTATCACTT 193
Query 336 ACTTTAACAAGAATTTCAAACATAGTCATCAAATATCTGTTTTGGTTGCGGACCCTCCAC 395
||||||||||| ||||| ||| || || ||||||||||||| ||||||||||||| |
Sbjct 194 ACTTTAACAAGTCTTTCATTGATACTCTTCGAATATCTGTTTTGCTTGCGGACCCTCCTC 253
Query 396 CGAGGAGGACACAAGGGAA-G--G-T--------TG---ATGCTTATGCTAAAGGAGATA 440
| ||||||||||||||| | | | || ||||||||||||||||||| |
Sbjct 254 C---GAGGACACAAGGGAAGGCTGATGAAAAGAGTGAACATGCTTATGCTAAAGGAGACA 310
Query 441 AACAGATTCAGAAGAAGGATCCAGAAGTTGATCATGATCCTCAGCTTCAAGAATTTCTTC 500
|| ||||| ||||||| | ||||| | ||||||||||||||||||||||||||||||||
Sbjct 311 AAAAGATTAAGAAGAA--A-CCAGAGGCTGATCATGATCCTCAGCTTCAAGAATTTCTTC 367
Query 501 ATCAGGAGCATAAGTTGAAATTCTGGTCCAATGACATGTGTATTCATCCTTCCAATGG-- 558
|| || | | |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 368 ATGAGCATAAGAAGTTGAAATTCTGGTCCAATGACATGTGTATTCCTCCTTCCACCGGCA 427
Query 559 -TG--CTGATGAC-CC--TAA-------CAA---AGCCAAAAGATCATTCTTAGATTCTA 602
| | | | || ||| ||| ||||||||||||||||||||| |||
Sbjct 428 AAGAAAAGGTCTCTCCAGTAAGTTTTTCCAATGGTGCCAAAAGATCATTCTTAGATCCTA 487
Query 603 AAAAGACTAGAAAGAGTAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTC 662
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 488 AAAAGACTAGAAAGAATAAAGTTGGTGACGATGTTTCTGATATGGAATACTTGAAGAGTC 547
Query 663 GGATAAAGAAAAA----TC----T-GGACAGTGATTGTGAAACCGATAGTCGTGAAGATG 713
||||||||||||| || | |||||||||||||||||| ||||||||||||||||
Sbjct 548 GGATAAAGAAAAATCTGTCGGATTCGGACAGTGATTGTGAAACTGATAGTCGTGAAGATG 607
Query 714 CAA-TCAATGTTTTTCCTATTGATGGAGAAGTTAAAGCTGACAGAGTCGACAAAGATGAT 772
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 CAATTC-ATGTTTTTCCTATTGATGGAGAAGTTGAAGCTGACAGAGTCGACAAAGATGAT 666
Query 773 GATGGCCATGCAATGG--AGGTAGAAGCCGATGGCAGTGATGATGTTCTTGACGCTGGTC 830
|||| ||| |||| | | | | | |||||||||||||||||||||||| || |||
Sbjct 667 GATGATGATG--ATGGCCATGCA-ATG--GATGGCAGTGATGATGTTCTTGACACTAGTC 721
Query 831 GCCTTTTCGTCCATGGCCTGCCTTACTCTACCA-CAGAAGAAGAGCTTATGGAACATTTC 889
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 722 GCCTTTTCGTCCATGGCCTGCCTTACTCTA-CAGCAGAAGAAGAGCTTACGGAACATTTC 780
Query 890 AGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGACAAGGATACCAGAAGTTGC 949
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 781 AGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGACAAGGATACTAGAAATCCC 840
Query 950 AGGGGAATGGCCTTCGTCCTTTACCTGATACCGGAATCTGCAAAAATGGCAATGGATAAA 1009
|| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 841 AGAGGAATGGCCTACGTCCTTTACCTGATACCGGAATCTGCAAAAAGGGCAATGGAGAAA 900
Query 1010 TTAGATAAGTTACCTTTCCAGGGCCGGACGTTGCATATTTTACCAGCTAAGCCCCGTGCA 1069
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 901 TTAGATAAGTTACCTTTCCAGGGGCGGACGTTGCATATTTTACCAGCTAAGCCCTGTGCA 960
Query 1070 ATGTCTGCTAAACAAG 1085
| ||||||||||||||
Sbjct 961 AAGTCTGCTAAACAAG 976
Score = 363 bits (196), Expect = 5e-99
Identities = 265/295 (90%), Gaps = 17/295 (6%)
Strand=Plus/Plus
Query 2121 GAC-AGATTCAAGAGAGTTGGGCTTCCATTGAAGAATGTGAGAAAATACGCTGGTTATGC 2179
||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||| ||
Sbjct 1960 GACAAGA-TCAAGAGAGTTGGGCTTCCATTGAAGACTGTGGGAAAATATGCTGGTTTTGG 2018
Query 2180 TTTTGTAGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCACTCTCCAACAC 2239
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2019 TTTTGTTGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCATTCTCCAACAC 2078
Query 2240 CCATTTCTATGGACGCCATTTGGTGCTCGAGTGGGCTCGTGATGACGAGAGCATGGAAGC 2299
|||||||||||||||||| ||||||||||||||||||| ||||||| | || | | ||
Sbjct 2079 CCATTTCTATGGACGCCAATTGGTGCTCGAGTGGGCTCATGATGAC-A-AG-A-G-AA-- 2131
Query 2300 GATTCAAAAATCTTGTGCTGCCAAGTATATGGGCCAAGAAAACGATAATCCAAAGAAAAG 2359
| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2132 -A---A----TCTTGTGCTGCCAAGTATATGGACCAAGAAAACGATAATCCAAAGAAAAG 2183
Query 2360 GAAAAGCTCGACAGTTGTTGGTAGTGGTAGAGAGACGTCAAAGAAAAGGTTATAG 2414
|||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2184 GAAAAGATGGACAGTTGTTGGTAGAGGTAGAGAGACGTCAAAGAAAAGGTTATAG 2238
> Ahg349841 jgi|Araly1|349841|fgenesh1_pg.C_scaffold_6000434
Length=2079
Score = 1445 bits (782), Expect = 0.0
Identities = 1085/1226 (88%), Gaps = 42/1226 (3%)
Strand=Plus/Plus
Query 811 TGATGTTCTTGACGCTGGTCGCCTTTTCGTCCATGGCCTGCCTTACTCTACCACAGAAGA 870
||||||||||||| |||||||||||||||||| | |||||||||| || | ||||||||
Sbjct 618 TGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 677
Query 871 AGAGCTTATGGAACATTTCAGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGA 930
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 678 AGAGCTTACGGAACATTTCAGCAAATTCGGTGAAATATCAGAGGTCCATCTTGTTCTTGA 737
Query 931 CAAGGATACCAGAAGTTGCAGGGGAATGGCCTTCGTCCTTTACCTGATACCGGAATCTGC 990
|||||| || | || || ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 738 CAAGGAGACAAAAAATTCCAGAGGAATGGCCTTCGTCCTTTACCAGATACCGGAATATGC 797
Query 991 AAAAATGGCAATGGATAAATTAGATAAGTTACCTTTCCAGGGCCGGAC-GTTGCATATTT 1049
||||| ||||||||| |||||||||| | ||||||||| ||| | |||||||||||
Sbjct 798 AAAAAGGGCAATGGAGGAATTAGATAACAAAGATTTCCAGGGGCGG-CTGTTGCATATTT 856
Query 1050 TACCAGCTAAG--CCCCG-T--GCAA-TGTC--TG-CTA-AAC-AAG--T--AGATAACT 1094
||||||||||| || | | ||| |||| || | | | | | | | ||||||
Sbjct 857 TACCAGCTAAGAAGCCTGATAAACAAGTGTCAGTGACCAGTTCTATGTTTCGAAATAACT 916
Query 1095 CCTCTAATCTGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGGCGTCTGAA 1153
| ||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 917 CTTCTAATCTGCCAAAAGCATTCAAGCAAA-AGAGGGAGGAACAAAGAAAGGCGTCTGAA 975
Query 1154 GCTTGTGGAAACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAA 1213
|| ||||||| ||||| |||||||| ||||| |||||||||||||||||| || |||||
Sbjct 976 GCCAGTGGAAATACAAAAGCTTGGAATAGTTTTTTCATGCGACCCGATACTGTCGTGGAA 1035
Query 1214 AACTTAGTCAGGTCG-TATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAATGCGAAGA 1272
||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1036 AACATAGTCAGGT-GTTATGGTGTAACAAAGAGTGAGTTTCTTGACCGTGAATGCGACGA 1094
Query 1273 TCCTGCAGTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAGAAGCCCT 1332
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1095 TCCTGCAGTACGACTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAGAAGCACT 1154
Query 1333 TGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGACGT 1392
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1155 TGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTTCTGCACGGAAAGGTGATGT 1214
Query 1393 GAAGAACAGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCACTGAAAA 1452
||||||| |||||||||||||||||||||| ||| ||||||| |||||||||| ||||||
Sbjct 1215 GAAGAACCGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCAGTGAAAA 1274
Query 1453 GGAACTGGCTCAAATGTTTCGGAA-ATTTGGAAGTCTAGACAAAATTGTTCTCCCTCCGA 1511
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 1275 GGAACTGGCTCAAATGTTT-GGAAGATTTGGAAGTCTAGACAAAATTGTTCTCCCTCGGA 1333
Query 1512 CTAAGACGATGGCTTTGGTTGTTTTCCTTGAAGCGGCTGAGGCACGTGCAGCTATGAACG 1571
| |||||| |||||||| ||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1334 CGAAGACGTTGGCTTTGTTTGTTTTCCTTAAACCGGCTGAGGCACGTGCAGCTATGAAGG 1393
Query 1572 GATTGGCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTCG-AGAT 1630
|| || ||||| |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1394 GAATGAAATACAAGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCT-GAAGAT 1452
Query 1631 ATTCTTGAGCCAAAAGCACTTGCC-GATAACAAAGAAAAGAAGAGTGCTGTCGAAGAAAA 1689
||||||||||||||||||||| || |||||||| ||||||| ||||| ||| ||||||||
Sbjct 1453 ATTCTTGAGCCAAAAGCACTT-CCTGATAACAATGAAAAGACGAGTGATGTTGAAGAAAA 1511
Query 1690 TGATGCGAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCGAGTC 1749
||||| ||||||| ||||||| |||||||||||||||||| ||| ||||||||| |||||
Sbjct 1512 TGATGTGAGAAGACTCAACTTGGATCAGCAGGTTGGAATCGATTTGGATATAACTGAGTC 1571
Query 1750 AAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGAAGCA 1809
|||||||||| |||| |||||||||| |||||| |||||||||||| | |||| ||||||
Sbjct 1572 AAATGTCCTTTATGTTAAGAATCTGAACTTCAACACAACTGATGAGAGTTTGAGGAAGCA 1631
Query 1810 TTTGACTGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAAGAGACT- 1868
|||||||| | ||||||||||||||||||||||||||||| | |||||| || | | |
Sbjct 1632 TTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTGTT-A--AGATAA-AAAAAAATG 1687
Query 1869 GGACGAGACG---TCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1925
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 GGAAGAGTCGTCCTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1747
Query 1926 CGACCAGTGTCTACAGAGATCTACCAGG-AA-A--TGTTCTGGATGGGCATTCTTTGATC 1981
|||||||||||||||||||||||| ||| || | | |||||||| ||||| ||||||
Sbjct 1748 CGACCAGTGTCTACAGAGATCTAC-AGGGAACAACTTTTCTGGATCGGCATAAATTGATC 1806
Query 1982 TTGA-ATTTTTCTGAAAACAAGCGGA 2006
|||| ||| | |||||||||||||||
Sbjct 1807 TTGAGATTCT-CTGAAAACAAGCGGA 1831
Score = 287 bits (155), Expect = 3e-76
Identities = 316/388 (81%), Gaps = 34/388 (9%)
Strand=Plus/Plus
Query 192 TGACAGAGGATCAACTACGAGGTATCTTTTCGGAAAAAGGAGAAATCACAGACGTGAAAT 251
|||||||||||| ||| ||| | ||||||| |||||||||||||||||||||||||||
Sbjct 2 TGACAGAGGATCGACTTCGAAATGTCTTTTCAAAAAAAGGAGAAATCACAGACGTGAAAT 61
Query 252 TGAAGCGTTTA-AGTGATGGCAGAAGTAGACAATTTGCTTATATTGGATTTCGTAGTGAA 310
||| ||| | | ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 62 TGAGGCG-TAAGAGTGATGGCAGAAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAA 120
Query 311 CAAAAAGCTCAAGATGCTATCACTTACTTTAACAAGAATTTCAAACATAGTCAT-CAAAT 369
||| ||||||||||||||||||| || ||||||||| ||||| ||| | || |||||
Sbjct 121 CAAGAAGCTCAAGATGCTATCACATATTTTAACAAGTCTTTCATTGATACT-ATTCAAAT 179
Query 370 ATCTGTTTTGGTTGCGGA-CCCTCCACCGAGGAG-GACA--CAAGG-----GAA----G- 415
||||||| ||||||| | |||||| ||||||| || | ||||| ||| |
Sbjct 180 ATCTGTTGAGGTTGCG-ATCCCTCCTCCGAGGAAAGA-AGGCAAGGTTATTGAAAATAGT 237
Query 416 G----TTG----A-TGCTTATGCTAAAGGAGATAAACAGATTCAGAAGAAGGATCCAGAA 466
| || | |||||||||||||||||| ||| || || ||||||| | | |||
Sbjct 238 GAACATTTTTCTAATGCTTATGCTAAAGGAGACAAAAAGTTTAAGAAGAAAG--C-AGAG 294
Query 467 GTTGATCATGATCCTCAGCTTCAAGAATTTCTTCATCAGGAG-CATAAGTTGAAATTCTG 525
| ||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 295 GCTGATCATGATCCTCAGCTTCAAGAATTTCTTGATCAGCATACG-AAGTTGAAATTCTG 353
Query 526 GTCCAATGACATGTGTATTCATCCTTCC 553
|||||||||||||||||||| || ||||
Sbjct 354 GTCCAATGACATGTGTATTCCTCGTTCC 381
Score = 279 bits (151), Expect = 5e-74
Identities = 196/218 (90%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 2073 CTTTTGAAGCAACCAAGAAAGAACTAAGACAGCTTTTCAGTCCATTTGGACAGATTCAAG 2132
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1832 CTTTTGAAGCAACCAAGCAAGAACTAAGACAGCTTTTCAGTCCATTTGGACAGAT-CAAG 1890
Query 2133 AGAGTTGGGCTTCCATTGAAGAATGTGAGAAAATACGCTGGTTATGCTTTTGTAGAATTT 2192
||||||| ||||||| ||||||| | ||| ||| |||||||||| |||| | | ||||
Sbjct 1891 AGAGTTGAGCTTCCAGAGAAGAATCCGGGAAGATATGCTGGTTATGGTTTTATTGTATTT 1950
Query 2193 GGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCACTCTCCAACACCCATTTCTATGGA 2252
||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1951 GGGACAAAGCAAGAAGCTTTAAACGCTAAAAAGGCATTATCCAACACCCATTTCTATGGA 2010
Query 2253 CGCCATTTGGTGCTCGAGTGGGCTCGTGATGACGAGAG 2290
|||| |||||||||| |||||||| | |||||| ||||
Sbjct 2011 CGCCCTTTGGTGCTCCAGTGGGCTAGGGATGACAAGAG 2048
Score = 195 bits (105), Expect = 2e-48
Identities = 183/217 (84%), Gaps = 20/217 (9%)
Strand=Plus/Plus
Query 550 TTCCAATGGTGCTGATGACCCTAACAAAGCCAAAAGATCATTCTTAGATTCTAAAAAGAC 609
|||||||||||||||||| |||||||||||||||| |||||| |||||| || ||
Sbjct 414 TTCCAATGGTGCTGATGAGCCTAACAAAGCCAAAACATCATTATTAGATACT------AC 467
Query 610 TAGAAAGAGTAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGATAAA 669
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 468 -AG--AGAATAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTCGGATATA 524
Query 670 -GAAAAATCTGGACAG-TGATTGT---GAAACCGATAGTCGTGAAGATGCAAT-CAATGT 723
| || | || | || ||||| | ||||| |||||||||||||||||||| || ||
Sbjct 525 TGGAATA-CTTCA-AGATGATTATTATGAAACTGATAGTCGTGAAGATGCAATTCA-TGC 581
Query 724 TTTTCCTATTGATGGAGA-AGTTAAAGCTGACAGAGT 759
|||||||||||||||||| | || |||||||||||||
Sbjct 582 TTTTCCTATTGATGGAGATA-TTGAAGCTGACAGAGT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99682171165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5