BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08720.1 Length=2324 Score E Sequences producing significant alignments: (Bits) Value Ahg487714 jgi|Araly1|487714|fgenesh2_kg.6__848__AT5G08720.1 3757 0.0 > Ahg487714 jgi|Araly1|487714|fgenesh2_kg.6__848__AT5G08720.1 Length=2312 Score = 3757 bits (2034), Expect = 0.0 Identities = 2225/2316 (96%), Gaps = 17/2316 (1%) Strand=Plus/Plus Query 1 ATCTTCTTCCTCTACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCTTCTTCCTCCACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60 Query 61 GTTTCCACATCTCTCTCATGGCGTTCACACTATCAATTTCCTCAA--T-------GAACC 111 |||| |||||||| |||||||||||||||||||| |||||||| | ||||| Sbjct 61 ACTTCCTCATCTCTCCCATGGCGTTCACACTATCAACTTCCTCAATTTCACCAACGAACC 120 Query 112 AGTGTTTTTAAGTGTGTTGCTCCCATCTCCCTCTCGGATTCGAGTATTCTCGTCCATTTC 171 ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 121 AGTGTTTTTAAGTGTATTGCTCCCATGTCCCTCTCGGATTCGAGTATTCTCGACCATTTC 180 Query 172 CACCTCCGGGATCGGC-G-GC-GGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 228 |||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 181 CACCACCGGGATCGGCGGCGCTGGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 240 Query 229 CGGTGGTAGAGGTGATAACGGGTTGAGGAGAGATAGTGGATTAGGTTTCGACgagagagg 288 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 C---GGTAGAGGTGATAACGGGTTGAGGAGCGATAGTGGATTAGGTTTCGACGAGAGAGG 297 Query 289 agagagaAAAGTGCGTTGTGAGGTTGATGTGATCTCGTGGAGAGAACGGAGGATAAGAGG 348 |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 298 GGAGAAAAAAGTGCGTTGTGAGGTTGATGTGATCTCTTGGAGAGAACGGAGGATAAGAGG 357 Query 349 CGAAATCTGGGTCGATTCTGATTCTCAATCTGTTTGGAATGTTCTTACTGATTATGAACG 408 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 358 CGAAATCTGGGTCGATTCCGATTCTCAATCTGTTTGGAATGTTCTCACTGATTATGAACG 417 Query 409 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 477 Query 469 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATTGAGGCTCG 528 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 478 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATCGAGGCTCG 537 Query 529 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGTCGTGAGCTTCACTTCTC 588 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 538 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGCCGTGAGCTTCACTTCTC 597 Query 589 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 657 Query 649 GTCCGTAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCAAGATTTAACTTCCCTGC 708 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 658 GTCCATAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCCAGATTTAACTTCCCTGC 717 Query 709 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 777 Query 769 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 837 Query 829 TATAATATCTTCACAGCCAGCCCCTTCTAATGGTATTGAGTTCGATAGTCTTGCTACGGA 888 || ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| || Sbjct 838 TAGAATATCTTCACAGCCAGCCCCTTCTCATGGTGTTGAGTTCGAAAGTCTTGCTACTGA 897 Query 889 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 957 Query 949 GGGAGTGTATGGAAAAGCCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1008 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 958 GGGAGTGTATGGAAAAGTCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1017 Query 1009 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGATGCGCCGTTGCTAGTAT 1068 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1018 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGTTGCGCCGTTGCTAGTAT 1077 Query 1069 AACAGTTAAAGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACGTCTTATGAGAGTCTTCC 1128 ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1078 AACAGTTAAGGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACTTCTTACGAGAGTCTTCC 1137 Query 1129 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAAGTCCG 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1138 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAGGTCCG 1197 Query 1189 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCAAGAGCTGTTCT 1248 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1198 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCGAGAGCTGTTCT 1257 Query 1249 CGATTTGCATGAGATTCGTGAGCAGGAAATCAGATTTGAACAGGTTGAAGGAGACTTTGA 1308 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1258 CGATTTGCATGAGATTCGCGAGCAGGAAATCAGATTTGAGCAGGTTGAAGGAGACTTTGA 1317 Query 1309 CTCGCTAGAGGGGAAATGGATTTTTGAACAACTAGGAAGTCACCACACACTTCTCAAGTA 1368 ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1318 ATCGCTAGAGGGAAAATGGATTTTTGAACAATTAGGAAGTCACCACACACTTCTCAAGTA 1377 Query 1369 TACCGTGGAGTCCAAAATGAGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1428 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TACCGTGGAGTCCAAAATGCGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1437 Query 1429 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATCCGGGATTACATTGAGAAAAGAGG 1488 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1438 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATTCGGGATTACATTGAGAAAAGAGG 1497 Query 1489 AGAGAAATCTTCAGAGTCATGTAAACTGGAGACATGTCAAGTTTCAGAGGAAACATGTTC 1548 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1498 AGAGAAATCTTCAGAGTCATGTAAGCTGGAGACATGTGAAGTTTCAGAGGAAACATGTTC 1557 Query 1549 TTCATCTCGTGCCA-AATCAGTTGAGACAGTTTACAATAATGATGATGGTTCAGACCAAA 1607 |||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1558 TTCATCTCGTGCCACAA-CAGTTGAGACAGTTTACAATAGTGATGATGGTTTGGACCAAA 1616 Query 1608 CTAAGCAGAGACGGAGGATTCCTGGTCTACAAAGAGACATTGAAGTCTTGAAATCAGAAA 1667 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | Sbjct 1617 CTAAGCAGAGACGGAGGATTCCCGGTCTGCAAAGAGACATTGAAGTATTGAAATCAGAGA 1676 Query 1668 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1736 Query 1728 GGTTACATGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1787 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 GGTTACACGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1796 Query 1788 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1797 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1856 Query 1848 ACAATCTCGAAAACTTGCAAGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1907 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1857 ACAATCTTGAAAACTTGCAGGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1916 Query 1908 CATCATTTATGCCGAGCAGAAAATCTTTCGAACGAGCAGGTCGTTATGACATTGCTCGGG 1967 ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| Sbjct 1917 CATCATTTATGCCGAGCAGAAAAACGTTCGAACGCGCAGGTCGTTATGACATTGCGCGGG 1976 Query 1968 CGCTCGAGAAATGGGGAGGATTACACGAAGTATCTCGTCTTTTAGCATTGAACGTGAGAC 2027 |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1977 CGCTGGAGAAATGGGGAGGATTACACGAAGTGTCTCGTCTTCTAGCATTGAACGTGAGAC 2036 Query 2028 ATCCAAACAGGCAGCTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2087 |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2037 ATCCGAACAGACAGGTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2096 Query 2088 CTACTGAGGCCGATTTAAATTCAACGGTTAATAAGAATAATAAACCTTACGTCTCTCAAG 2147 |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| Sbjct 2097 CTACCGAGGCCGATTTAAATTCAGCGGTTAATAAGAAAAATAAACCTTACGTCTCTGAAG 2156 Query 2148 ATACCGAGAAATGGTTGTACAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTGAA 2207 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 2157 ATACAGAGAAATGGTTGTATAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTAAA 2216 Query 2208 GCATTAATTATGTACATTTCACTATTTGTGTAGTCTTGTAACTCGCAAAGATAAACATGT 2267 |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 2217 GCATTAGTTATGTACATTTCAATATTTGTGTAGTCTTGTAATTCGCAAAGATAAACATGT 2276 Query 2268 ATTTATGTAAATTGTAACATTGGATTGAAATTATCT 2303 |||||||||||||| |||||| ||||||||| |||| Sbjct 2277 ATTTATGTAAATTGCAACATTAGATTGAAATAATCT 2312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87531383010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5