BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G08740.1 Length=1911 Score E Sequences producing significant alignments: (Bits) Value Ahg940367 jgi|Araly1|940367|scaffold_600911.1 2566 0.0 Ahg948554 jgi|Araly1|948554|scaffold_800441.1 148 1e-34 > Ahg940367 jgi|Araly1|940367|scaffold_600911.1 Length=1605 Score = 2566 bits (1389), Expect = 0.0 Identities = 1535/1607 (96%), Gaps = 4/1607 (0%) Strand=Plus/Plus Query 82 TTCCGGCGATATAT-AAAGTCAGCAATGGCCGTTCTCTCCTCTGTATCTTCTCTCATACC 140 |||||||||||| | ||||||| ||||||||||||||||||| |||||||||||| |||| Sbjct 1 TTCCGGCGATAT-TCAAAGTCAACAATGGCCGTTCTCTCCTCCGTATCTTCTCTCTTACC 59 Query 141 CTTCTCTTATGGGGCAACGAGACTGACTAGTAAAGCTTCATTAGCCTCAAGAACTTCCGG 200 ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || Sbjct 60 CTTCTCTTATGGGGCAAAGAGACTGACTAGTAAAGCTTCTTTAGCTTCAAGAACTTCTGG 119 Query 201 ATTCAATCTCTCTTCTCGTTGGAACTCAACGAGAAACTCCCCTATGTTGTATCTTTCGAG 260 |||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| Sbjct 120 ATTCAATCTCTCTTCTCGTTGGCACTCAACGAGAAGCGCCCCTAGGTTGTATCTTTCGAG 179 Query 261 AGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGATAATGAAACAGCTCCAAGGAC 320 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 GGCAGTGACAAACAACAGTGGCACCACAGAGATTTCTGAGAATGAAACAGCTCCAAGGAC 239 Query 321 TTACTCATGGCCTGATAACAAGAGGCCAAGGGTGTGCATTCTAGGTGGTGGCTTTGGAGG 380 |||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 240 TTACACATGGCCTGATAACAAGAGACCAAGGGTGTGTATTCTAGGTGGTGGGTTTGGAGG 299 Query 381 ATTGTACACAGCTTTGAGATTAGAATCTCTTGTTTGGCCTGAAGACAAAAAGCCTCAGGT 440 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 300 ATTGTACACAGCTTTGAGATTAGAATCGCTTGTGTGGCCTGAAGACAAAAAACCTCAGGT 359 Query 441 GGTTTTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTC 500 ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 360 TGTTCTGGTTGACCAATCCGAACGTTTTGTGTTCAAGCCGATGTTGTATGAACTTCTCTC 419 Query 501 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGG 560 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 TGGAGAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTACTTACAAACACGGG 479 Query 561 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTTAA 620 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 GATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGACCATTTAGGAGTGAA 539 Query 621 TGGGTCTGAGATTTCTGTTACTGGAGGAACCGTCTTGCTCGAAAGCGGTTTTAAAATCGA 680 ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 540 TGGGTCTGAAAGTTCTGTTACTGGAGGAACTGTCTTGCTCGAAAGCGGTTTTAAAATTGA 599 Query 681 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGC 740 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 600 ATACGATTGGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGCGC 659 Query 741 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCCATTAGGGTTAACGAAAAGCT 800 ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 660 AATGGAGTTGGCTTTCCCATTCTACACTCTTGAAGATGCTATTAGAGTTAACAAAAAGCT 719 Query 801 GAGTAAATTGGAGAGGAAGAATTTTAAAGACGGATCTGCCATAAAAGTAGCTGTTGTTGG 860 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 720 GAGTAAATTGGAGAGGAAGAATTTCAAAGACGGCTCTGCCATAAAAGTGGCTGTTGTTGG 779 Query 861 CTGCGGTTATGCAGGAGTAGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 920 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GTGCGGATATGCAGGAGTTGAGTTGGCTGCTACCATATCAGAGAGACTGCAAGATCGTGG 839 Query 921 AATAGTGCAGTCCATTAACGTATCAAAGAATATACTAACATCAGCCCCTGATGGGAACAG 980 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 840 AATAGTGCAGTCCATTAACGTATCAAAGGATATACTAACATCAGCCCCTAATGGGAACAG 899 Query 981 AGAAGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTCTTAGGTTATCTTGT 1040 || ||||||||||||||||||||||||||||||||||||||||| || |||||||| || Sbjct 900 GGAGGCGGCTATGAAGGTCCTTACGTCGAGAAAAGTCCAATTACTTTTGGGTTATCTGGT 959 Query 1041 TCAATCCATAAAGAGAGCAAGCAACCT-AGAAGAAGATGAAGGATATTTTTTAGAGCTTC 1099 |||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||| Sbjct 960 TCAATCCATAAAGAGAGCAAGCGA-CTCAGAAGAAGATGAAGGATATTTGTTAGAGCTTC 1018 Query 1100 AACCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1159 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AGCCTGCAGAAAGAGGATTAGAGAGTCAAATTATTGAAGCGGATATAGTGTTATGGACAG 1078 Query 1160 TTGGTGCTAAGCCTTTGCTTACTAAATTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1219 | ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1079 TCGGTTCTAAGCCTTTGCTTACCAAACTAGAACCCTCGGGTCCCAATGTCCTTCCTTTGA 1138 Query 1220 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATAT 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1139 ATGCTAGAGGACAAGCGGAAACAGACGAGACACTCCGTGTTAAAGGACATCCACGGATTT 1198 Query 1280 TTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAG 1339 |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1199 TTGCATTAGGTGATTCTTCTTCTCTAAGAGACTCAAATGGAAAGCTTCTTCCTACAACAG 1258 Query 1340 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATAAATA 1399 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1259 CTCAGGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATTTGGGCAGCCATAAATA 1318 Query 1400 ACCGACCTTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1459 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 ACCGACCGTTATTACCATTCAGGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGAT 1378 Query 1460 ATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTC 1519 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1379 ATGATGCTGCTATTTCGCCAAGTTTCATTGAAGGGCTTACTCTTGAAGGTCCAATTGGCC 1438 Query 1520 ACGCAGCGAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTATGG 1579 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1439 ACGCAGCAAGAAAACTGGCGTATTTGATTAGACTACCAACTGATGAACACCGGTTTAAGG 1498 Query 1580 TCAGAATCAGTTGGTTTGCTAAATCTGCTGTTGATTCAATTGCTTTACTTCAGAGCAATC 1639 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1499 TCGGAATCAGTTGGTTTGCTAAATCTGCTGTTGACTCAATTGCTTTACTTCAGAGCAATC 1558 Query 1640 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1686 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 TAACCAAGGTTTTGTCTGGTTCTTGATCTCTGTTTGTTTTGCTCTGG 1605 > Ahg948554 jgi|Araly1|948554|scaffold_800441.1 Length=262 Score = 148 bits (80), Expect = 1e-34 Identities = 90/95 (95%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 689 GGTTGGTTCTTGCTCTTGGCGCTGAATCTAAACTCGATGTTGTTCCCGGTGCAATGGAGT 748 ||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 94 GGTTGGTTCTTGCCCTCGGCGCTGAATCTAAACTTGATGTTGTTCCCGGCGCAATGGAGT 153 Query 749 TGGCTTTCCCATTCTACACTCTTGAAGATGCCATT 783 ||||||||||||||||||||||||||||||| ||| Sbjct 154 TGGCTTTCCCATTCTACACTCTTGAAGATGCTATT 188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71800111825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5