BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09260.1 Length=1040 Score E Sequences producing significant alignments: (Bits) Value Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700 1088 0.0 Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1 675 0.0 Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1 372 3e-102 Ahg921570 jgi|Araly1|921570|scaffold_102851.1 303 1e-81 > Ahg325480 jgi|Araly1|325480|fgenesh1_pm.C_scaffold_6000700 Length=654 Score = 1088 bits (589), Expect = 0.0 Identities = 633/654 (97%), Gaps = 3/654 (0%) Strand=Plus/Plus Query 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGGAATTTGTTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTTTCT 60 Query 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 120 Query 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 180 Query 225 GCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 284 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 240 Query 285 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTGAG 344 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAGCAGTCTTTGAG 300 Query 345 AGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATGAT 404 |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| Sbjct 301 AGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGATGAT 360 Query 405 GTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTGCC 464 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 361 GTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGATGAACTGAGTGCC 420 Query 465 ATATTAGGTGAGAAACTATCAGCGGAAGATGAAGAAGAGATCTTAGCAGAATTCGACAAC 524 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 421 ATATTAGGTGAGAAACTATCAGCAGAAGATGAAGAAGATATCTTAGCAGAATTCGACAAC 480 Query 525 CTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTCATGCCT 584 |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 481 CTAGAAAGTCAGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTTGTGCCT 540 Query 585 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 600 Query 645 G-A-AAC-CACTTCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 695 | | || |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCAGAAATCACTCCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 654 > Ahg496578 jgi|Araly1|496578|fgenesh2_kg.8__2394__AT5G63880.1 Length=859 Score = 675 bits (365), Expect = 0.0 Identities = 528/606 (87%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 44 GATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCT 102 |||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 68 GATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCT 126 Query 103 CTCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTG 162 |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct 127 CTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTG 186 Query 163 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 222 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 187 AAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGT 246 Query 223 TAGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 282 ||||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| ||| Sbjct 247 TAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCA 306 Query 283 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTG 342 ||||||| ||||||||||| |||||||| |||||||| ||||| ||||| || || |||| Sbjct 307 TCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAACAAAAGGCTGTGTTTG 366 Query 343 AGAGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATG 402 ||||||||||||| ||||| | ||| |||||||| ||||| |||||| | ||||||||| Sbjct 367 AGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAGTTGGACCTTGATG 426 Query 403 ATGTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTG 462 ||||||||||||| |||||||| ||||| || || || |||||||| ||||| |||| || Sbjct 427 ATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTATCAAGATGAGCTGAATG 486 Query 463 CCATAT-TAGGTGAGAAACTATCAGCGGAAGATGAAGAAGA-GATCTTAGCAGAATTCGA 520 | || | | || ||||| |||||||| || ||||||||||| | | ||||||||||| || Sbjct 487 CTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATG-TATTAGCAGAATTTGA 544 Query 521 CAACCTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAG-AGCTCA 579 |||||||||||||| ||| |||||||| || |||||| |||||||||||| || || || Sbjct 545 CAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGA-AGGAG-TC- 601 Query 580 TGCCTGAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTT 639 | |||||| | || || ||||||| || ||||||||||||||| | || ||||||| Sbjct 602 --C--GAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGCTT 657 Query 640 CCAATG 645 |||||| Sbjct 658 CCAATG 663 > Ahg887426 jgi|Araly1|887426|Al_scaffold_0697_1 Length=255 Score = 372 bits (201), Expect = 3e-102 Identities = 238/256 (93%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 45 ATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCTC 103 ||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC 59 Query 104 TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGA 163 ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 60 TCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGA 119 Query 164 AGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTT 223 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 120 AGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGTT 179 Query 224 AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCAT 283 |||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| |||| Sbjct 180 AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCAT 239 Query 284 CAATGTCGAACAACAA 299 |||||| ||||||||| Sbjct 240 CAATGTTGAACAACAA 255 > Ahg921570 jgi|Araly1|921570|scaffold_102851.1 Length=313 Score = 303 bits (164), Expect = 1e-81 Identities = 201/219 (92%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104 ||||| ||||| ||| |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 21 ATGGGAAATTTGTTCCTGAAGAAACCTCAGATCACGGAGGTTGATCGAGTGATTCTCTCT 80 Query 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 81 CTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGAA 140 Query 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTT-GTT 223 || ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 141 GCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGA-CTTTTGTT 199 Query 224 AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAA 262 |||||||| ||| ||||| || ||||||||||| ||||| Sbjct 200 AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAA 238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38694760755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5