BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G09440.1 Length=1115 Score E Sequences producing significant alignments: (Bits) Value Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 1576 0.0 Ahg951254 jgi|Araly1|951254|scaffold_803141.1 359 3e-98 Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 344 8e-94 > Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 Length=1134 Score = 1576 bits (853), Expect = 0.0 Identities = 1051/1141 (92%), Gaps = 36/1141 (3%) Strand=Plus/Plus Query 1 ATATTCAAAAACAGAACACAA---C-CT-CTCT-TCTCACTCTATATACTCCCAAAATGG 54 |||||| ||||||||||| || | || |||| |||| ||||||||||||||||||||| Sbjct 1 ATATTCGAAAACAGAACAAAACCTCTCTGCTCTATCTCTCTCTATATACTCCCAAAATGG 60 Query 55 CTTATAACTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTT-TACC 113 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 61 CCTATAATTACCGTTTTGCCATTCTTCTCGTTCTCCTCTCCGCCACCGTCGGCTTCT-CC 119 Query 114 GCAGCCGCG-T--T------GAAGCCTCCGGTTCGAACCTTGAACGGAAACATTACTCTT 164 | |||||| | | |||||||||||| | |||||||| |||||||| ||||| Sbjct 120 TCCGCCGCGTTGGTCCAGAAGAAGCCTCCGGTGCCTACCTTGAAAGGAAACATCACTCTC 179 Query 165 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCATAATCGTCGATTTCATC 224 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 AATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGGTCCGTAATCGTCGATTTCATC 239 Query 225 CGCTCTATCAGTTCTGTCACCGCCGCCAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACG 284 |||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| Sbjct 240 CGCTCTATCAGTTCCGTCGCCGCCGCAAAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACT 299 Query 285 ACGGAGAAGTACAAAAC-CGGCGTTTCAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGA 343 |||||||||||| |||| || || ||||||||||| ||||||||||||||||||||||| Sbjct 300 ACGGAGAAGTAC-AAACAAGGTGTCTCAACTCTTGTCGTCGGTAAACAGCTCCTCCTTGA 358 Query 344 GAATTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTGTCAAGCAAACT 403 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 359 GAACTACCCTCTCGGAAAATCCCTAAAGAGCCCTTACCTTCGTGCTCTATCAAGCAAACT 418 Query 404 TAAC-GCTGGTGGTGCTCGGTCAATAACCGTCGTCTTAACGGCGAAAGACGTCACCGTTG 462 |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 419 TAACGGC-GGTGGTGCTCGGTCAATAACCGTCGTTTTAACGGCGAAAGACGTCACCGTCG 477 Query 463 AGGGACTCTGTATGAACCGATGCGGGACTCACGGGTCAAAGTCAAGTTCCGTTAACAGTG 522 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 478 AGGGACTCTGTATGAACCGGTGCGGGACTCACGGGTCAAAGTCACGTTCCGTTAACAGTG 537 Query 523 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GAGCTTACGTGTGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGT 597 Query 583 TTCATCAGCCTATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCG 642 |||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||| Sbjct 598 TTCATCAGCCTATCTACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCG 657 Query 643 GAGTTGACGGAATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702 |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 658 GAGTCGACGGAATGATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717 Query 703 CTCCAGAAGCTGTCTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCGGGTTACG 762 ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 718 CTCAAGAAGCTGTTTCGGCTTGTACCGGGATATTCGGTTCGGGTGCTTACCCAGGTTACG 777 Query 763 CGGGTCGGGTTCTCGTAGACAAGACGAGTGGAGCGAGTTACAACGCTTTGGGTCTCGCCG 822 ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 778 CGGGTCGGGTTCTTGTAGACAAGACAAGTGGAGCAAGTTACAACGCTTTGGGTCTCGCCG 837 Query 823 GTAGAAAATATCTATTGCCGGCGTTGTGGGATCCTCAGACTTCGACGTGTAAAACTATGG 882 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| Sbjct 838 GTAGAAAATATCTTTTGCCGGCGTTGTGGGATCCGCAGACTTCGACGTGTAAGACTTTGG 897 Query 883 TTTGAATTTTAGATGGTCTGTGAACGAGACACGTGGCTAGAATTGATGGTGATT---A-- 937 ||||| ||||||| |||| |||||||||||||||||| ||||| |||||||||| | Sbjct 898 TTTGATTTTTAGACGGTC-GTGAACGAGACACGTGGCAAGAATGGATGGTGATTGCGAGT 956 Query 938 --AAA-GCTTGTTGTAGTCAAAGAAAGTTTGTAGATAT--CTATCGCGTCTGGTTCGGAG 992 ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| | Sbjct 957 TTAAAAGCTTGTTGTAGTCAAAGAAAGTT-GTAGATATATCTATCGCGTCTGGTTCGGGG 1015 Query 993 TTTGGGGAAAGGGAT-GTGTTTGTTTTGTTATTTTGTTATGCCCTGTGTAAATTCGATCT 1051 ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1016 TTTGGGGAAAGGGATTGTGTTTGTTTTGTCATTTTGTTATGCCCTGT--AAATTCGATCT 1073 Query 1052 TTGGAAATATGTGAAAGATAGATTCATATATCTATTTTAATAATAACGATTTGTAGTTTC 1111 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1074 TTGGAAATATGTGAAATATAGATTCATATATCTATTTTAATAAAAACGATTTGTAGTTTC 1133 Query 1112 C 1112 | Sbjct 1134 C 1134 > Ahg951254 jgi|Araly1|951254|scaffold_803141.1 Length=959 Score = 359 bits (194), Expect = 3e-98 Identities = 464/589 (79%), Gaps = 40/589 (7%) Strand=Plus/Plus Query 143 CTTGAACGGAAACATTACTC-TTAATCTCATTTGGTACGGAAAATTCACCCCAATCCAAC 201 |||||| || ||||| || | |||||||||| |||||||| |||||||| || ||||||| Sbjct 140 CTTGAAAGGTAACATCAC-CGTTAATCTCATCTGGTACGGGAAATTCACACCGATCCAAC 198 Query 202 GGTCCATAATCGTCGATTTCATCCGCT--CT--A-T-C--AGTTCTG-T-CA-CCGCCGC 250 ||||| |||||||||| |||||||||| || | | | || | | | || || |||| Sbjct 199 GGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAG-AC-GTTGCATCCTCCGC 256 Query 251 CAAAGGTCCATCCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-T 309 | || ||| |||||||||||||||||||||||||||||||| |||||| ||| | | Sbjct 257 CGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCT 315 Query 310 CAACTCTTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAA 369 |||| || || ||||| |||||||| ||||| ||||| || |||||||||||||| |||| Sbjct 316 CAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAA 375 Query 370 AGAGCCCTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAAT 427 | | ||| |||| |||||| | || | |||| ||||||| | ||| ||| || | || Sbjct 376 AAAATCCTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCAT 430 Query 428 AACCGTCGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCG 486 ||||||||| || |||||||||||| || ||||| || || ||||||||| ||| |||| Sbjct 431 AACCGTCGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCG 489 Query 487 GGACTCACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTG 533 | |||||||| || || || || | || || |||| | | | |||||||| Sbjct 490 GCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTC 548 Query 534 TGGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCT 593 |||||||| ||||| || |||| ||| ||||| || ||||| ||||| ||||| || || Sbjct 549 TGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCG 608 Query 594 ATCTACGGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGA 653 || |||||||| || | ||||| |||||||| |||||||| ||||| |||||||||||| Sbjct 609 ATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGA 668 Query 654 ATGATTATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702 |||||||||||| |||| || ||||| | ||||||||| || ||||||| Sbjct 669 ATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGT 717 > Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 Length=858 Score = 344 bits (186), Expect = 8e-94 Identities = 458/583 (79%), Gaps = 44/583 (8%) Strand=Plus/Plus Query 153 AACATTACTC-TTAATCTCATTTGGTAC-GGAAAATTCACCCCAATCCAACGGTCCATAA 210 ||||| || | |||||||||| |||||| ||||||||||| || || ||||||||| ||| Sbjct 66 AACATCAC-CGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTAA 124 Query 211 TCGTCGATTTCATCCGCT--CT--A-T-C---AGTTCTG-T-CA-CCGCCGCCAAAGGT- 257 |||||||||||||||||| || | | | || | | | || || ||||| || | Sbjct 125 TCGTCGATTTCATCCGCTCGCTCAACTCCAAAAG-AC-GTTGCATCCTCCGCCGCAGTTC 182 Query 258 CCAT-CCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-TCAACTC 315 || | ||||||||||||||||||||||||||||||| |||||| ||| | ||||| | Sbjct 183 CCTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCTCAACAC 241 Query 316 TTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAAAGAGCC 375 | || ||||| |||||||| ||||| ||||| || |||||||||||||| ||||| | | Sbjct 242 TCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATC 301 Query 376 CTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAATAACCGT 433 || |||| |||||| | || | |||| ||||||| | ||| ||| || | |||||||| Sbjct 302 CTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCATAACCGT 356 Query 434 CGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCGGGACTC 492 ||| || |||||||||||| || ||||| || || ||||||||| ||| ||||| |||| Sbjct 357 CGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTC 415 Query 493 ACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTGTGGGTC 539 |||| || || || || | || || |||| | | | |||||||| |||||| Sbjct 416 ACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTCTGGGTC 474 Query 540 GGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTATCTAC 599 || ||||| || |||| ||| ||||| || ||||| ||||| ||||| || || || ||| Sbjct 475 GGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTAC 534 Query 600 GGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGAATGATT 659 ||||| || | ||||| |||||||| |||||||| ||||| |||||||||||||||||| Sbjct 535 GGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATT 594 Query 660 ATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702 |||||| |||| || ||||| | ||||||||| |||||||||| Sbjct 595 ATAAACCTCGCCACACTTCTCGCTAACACCGTCACGAATCCGT 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41553979530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5