BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09660.4
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487785 jgi|Araly1|487785|fgenesh2_kg.6__919__AT5G09660.1 1574 0.0
Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1 93.5 4e-18
> Ahg487785 jgi|Araly1|487785|fgenesh2_kg.6__919__AT5G09660.1
Length=1281
Score = 1574 bits (852), Expect = 0.0
Identities = 908/936 (97%), Gaps = 0/936 (0%)
Strand=Plus/Plus
Query 90 AGCTTCCTAACGAGAGGAAACTGAGGAACACAACAATGGAGTTTCGTGGAGATGCCAACC 149
||||| |||||||||| | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 55 AGCTTTCTAACGAGAGCACACAGAGGAACACAAAAATGGAGTTTCGTGGAGATGCCAACC 114
Query 150 AGAGGATTGCTAGGATTTCAGCTCATCTCACTCCTCAGATGGAGGCCAAGAACTCTGTAA 209
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 115 AGAGGATTGCTAGGATTTCAGCTCATCTCACTCCTCAGATGGAGACGAAGAACTCGGTAA 174
Query 210 TCGGACGGGAAAACTGCAGAGCTAAAGGTGGTAATCCAGGATTCAAAGTAGCAATTCTTG 269
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 175 TGGGACGGGAAAACTGCAGAGCGAAAGGTGGGAATCCAGGATTCAAAGTAGCAATTCTTG 234
Query 270 GAGCTGCAGGTGGAATTGGACAATCTTTATCTTTGCTGATGAAGATGAACCCTCTTGTCT 329
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GAGCTGCCGGTGGAATTGGACAATCTTTATCTTTGCTGATGAAGATGAACCCTCTTGTCT 294
Query 330 CTTTACTTCATCTCTACGATGTTGTCAATGCTCCTGGCGTCACTGCTGACGTCAGTCATA 389
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 295 CTTTACTTCATCTCTACGATGTTGTCAATGCACCCGGCGTCACAGCTGACGTCAGTCATA 354
Query 390 TGGACACTGGAGCTGTTGTCCGCGGGTTCTTGGGAGCGAAGCAGCTTGAGGACGCGCTAA 449
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 355 TGGACACTGGAGCTGTTGTCCGCGGATTCTTGGGAGCGAAGCAGCTTGAGGACGCGCTAA 414
Query 450 CGGGTATGGATCTTGTGATCATACCAGCCGGTATACCGAGGAAACCAGGGATGACCCGCG 509
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 415 CGGGTATGGATCTTGTGATCATACCAGCTGGTGTACCGAGGAAACCAGGGATGACCCGGG 474
Query 510 ATGATCTGTTTAAAATCAATGCTGGGATTGTTAAAACACTATGTGAAGGTGTAGCAAAAT 569
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 ATGATCTGTTTAAAATCAATGCTGGGATTGTTAAGACACTATGTGAAGGTGTAGCAAAAT 534
Query 570 GTTGTCCTAATGCTATTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTTGTCCTAATGCTATTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTG 594
Query 630 CCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAAGCTCCTTGGAGTTACTA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAAGCTCCTTGGAGTTACTA 654
Query 690 CACTCGATGTTGCTCGTGCCAACACATTTGTGGCAGAAGTTCTTGGCCTTGATCCAAGAG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACTCGATGTTGCTCGTGCCAACACATTTGTGGCAGAAGTTCTTGGCCTTGATCCAAGAG 714
Query 750 AAGTCGATGTGCCAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCAC 809
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 AAGTCGATGTACCAGTCGTTGGGGGACACGCGGGAGTCACAATCTTGCCACTACTGTCAC 774
Query 810 AGGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAACCGGATTC 869
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 775 AGGTTAAACCTCCTAGCAGCTTCACACCTCCAGAAATTGAGTACCTCACAAACCGGATTC 834
Query 870 AAAATGGTGGAACTGAAGTTGTGGAGGCAAAAGCTGGAGCTGGTTCTGCAACACTTTCAA 929
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 835 AAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGAGCTGGATCTGCAACACTTTCCA 894
Query 930 TGGCATATGCTGCAGCCAAGTTTGCAGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGGCATATGCTGCAGCCAAGTTTGCAGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGA 954
Query 990 ATGTCGTAGAATGCTCTTTTGTTGCTTCACAGGTGA 1025
||||||||||||||||||||||||||||||||||||
Sbjct 955 ATGTCGTAGAATGCTCTTTTGTTGCTTCACAGGTGA 990
Score = 355 bits (192), Expect = 5e-97
Identities = 208/216 (96%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 1090 CACAGGTGACAGAATTAGCTTTCTTTGCAACAAAAGTGCGCCTTGGCCGTACAGGAGCAG 1149
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CACAGGTGACAGAGTTAGCTTTCTTTGCAACAAAAGTGCGCCTTGGCCGTACAGGAGCAG 1041
Query 1150 AGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGGATTGGTCTGGAGAAAGCAA 1209
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1042 AGGAAGTGTATCAGCTTGGACCCTTAAACCAATACGAAAGGATTGGTCTGGAGAAAGCAA 1101
Query 1210 AAGATGAATTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAACTGAG 1269
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1102 AAGAAGAACTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAAGTGAG 1161
Query 1270 AGATAATCAGAGAGATACAATAAGTTATTTCCTCAA 1305
|||||||||||||||||||| ||| | |||||||||
Sbjct 1162 AGATAATCAGAGAGATACAAAAAGATCTTTCCTCAA 1197
> Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1
Length=1422
Score = 93.5 bits (50), Expect = 4e-18
Identities = 154/203 (76%), Gaps = 12/203 (6%)
Strand=Plus/Plus
Query 458 GATCTTGTGATCATACCAGCCGGTATACCGAGGAAACCAGGGATGACCCGCGATGATCTG 517
||||| || || || ||||| ||| |||| ||||| || || |||||||| || |||||
Sbjct 370 GATCTCGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT- 428
Query 518 TTT-AAAATCAATGCTGGGATTGTTAA-AACACTATGTG-A-AGGTGTAGCAAAATGTTG 573
||| || || || ||||| ||||| || ||| || | || | | | || || | ||
Sbjct 429 TTTCAACATTAACGCTGGAATTGTCAAGAAC-CT-T-TGCACTGCCATCGCCAAGTACTG 485
Query 574 TCCTA-ATGCTA-TTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTGCC 631
|| | |||| | || | ||| |||||||||||||||||||||||||||| || || ||
Sbjct 486 -CCCACATGC-ACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCA 543
Query 632 GCTGAGGTTTTCAAGAAAGCTGG 654
|||||| | |||||||| |||||
Sbjct 544 GCTGAGATATTCAAGAAGGCTGG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5