BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09740.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487793 jgi|Araly1|487793|fgenesh2_kg.6__927__AT5G09740.1 2436 0.0
Ahg496673 jgi|Araly1|496673|fgenesh2_kg.8__2489__AT5G64610.1 1354 0.0
> Ahg487793 jgi|Araly1|487793|fgenesh2_kg.6__927__AT5G09740.1
Length=1558
Score = 2436 bits (1319), Expect = 0.0
Identities = 1491/1573 (95%), Gaps = 16/1573 (1%)
Strand=Plus/Plus
Query 1 TATGAGAAAGAAAGCCCACCCGGGAATCTCCGACCCGACCGAGAAATGGGATCGTCAGCG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TATGAGAAAGAAAGCCCACCCGGGAATCTGCGACCCGACCGAGAAATGGGATCGTCAGCG 60
Query 61 AATACAGAAACCAACGGCAACGCACCGCCACCGTCGTCGAATCAAAAGCCTCCGGCTACG 120
|||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 61 AATACAGAAACCAACGGCAACGGAGCGCCACCGTCGTCTAATCAAAAGCCTCCGGCTACA 120
Query 121 AACGGCGTTGATGGGTCTCATCCTCCTCCTCCTCCTTTAACTCCTGATCAAGCTATTATA 180
||||||| ||||| ||||||||||||||||||| ||| | |||||||||||| ||||||
Sbjct 121 AACGGCGATGATGCGTCTCATCCTCCTCCTCCTTCTTCAGCTCCTGATCAAGGGATTATA 180
Query 181 GAGTCGGATCCGTCGAAGAAGAGGAAAATGGGGATGCTTCCTCTAGAAGTGGGTACTCGT 240
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 181 GAGTCGGATCCGTCGAAGAAGAGGAAAATGGGGATGCTTTCTCTGGAAGTGGGTACTCGT 240
Query 241 GTGATGTGTCGGTGGAGAGACGGGAAACACCATCCGGTGAAAGTAATTGAGCGCCGGCGG 300
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 241 GTGATGTGTCGGTGGAGAGACGGAAAACACCATCCGGTCAAAGTAATTGAGCGCCGGAGG 300
Query 301 ATACATAACGGCGGTCAAAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATAGG 360
|| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ----AT--------TCATAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATAGG 348
Query 361 AGGCTGGATGAATGGACTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTGTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGGCTGGATGAATGGACTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTGTT 408
Query 421 GATGAAAAAGTGGAAGACAAGGTAACAAGCTTGAAGATGACACGTCACCAGAAGAGGAAG 480
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 409 GATGAAAAAGTGGAAGACAAGGTAACGAGCCTGAAGATGACACGCCACCAGAAGAGGAAG 468
Query 481 ATCGATGAGACACATATAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGAACAT 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATCGATGAGACACATGTAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGAACAT 528
Query 541 GAAGAGTTCACGAAAGTGAAGAACATATCAACAATTGAGCTTGGAAAATATGAGATTGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAGAGTTCACGAAAGTGAAGAACATATCAACAATTGAGCTTGGAAAATATGAGATTGAG 588
Query 601 ACTTGGTACTTCTCCCCTTTTCCGCCAGAATACAATGACTGTGTGAAGCTCtttttttGT 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 ACTTGGTACTTCTCCCCTTTTCCGCCAGAATACAATGAATGTGTGAAGCTCTTTTTTTGT 648
Query 661 GAGTTTTGCCTGAACTTCATGAAACGCAAAGAGCAGCTTCAAAGGCATATGAGGAAGTGT 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 649 GAGTTTTGCCTGAACTTCATGAAACGCAAAGAACAGCTTCAAAGGCATATGAGGAAGTGT 708
Query 721 GACCTGAAGCACCCACCTGGTGATGAAATTTACCGAAGTGGTACCTTGTCAATGTTTGAG 780
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 709 GACCTGAAGCACCCCCCTGGTGATGAAATTTATCGAAGTGGTACCTTGTCAATGTTTGAG 768
Query 781 GTAGATGGCAAAAAGAACAAGGTTTATGCACAGAATCTCTGCTACCTGGCAAAGTTATTT 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 769 GTAGATGGCAAAAAGAACAAGGTTTATGCACAGAATCTCTGTTACCTGGCAAAGTTATTT 828
Query 841 CTTGACCACAAAACTCTTTACTACGATGTTGATTTGTTTCTATTCTACGTTCTTTGCGAA 900
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 829 CTTGACCACAAAACTCTTTACTACGACGTTGATTTGTTTCTGTTCTACGTTCTTTGCGAA 888
Query 901 TGTGATGACCGAGGATGCCACATGGTTGGGTACTTTTCAAAGGAGAAGCATTCGGAAGAA 960
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 TGTGATGATCGAGGATGCCACATGGTTGGATACTTTTCAAAGGAGAAGCATTCGGAAGAA 948
Query 961 GCATACAACTTAGCTTGCATTCTAACCCTGCCTTCATATCAAAGAAAAGGCTATGGAAAG 1020
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 949 GCATACAACTTAGCTTGTATTCTAACCCTGCCTCCATATCAAAGAAAAGGCTATGGAAAA 1008
Query 1021 TTCTTAATAGCCTTTTCCTATGAACTGTCAAAGAAAGAGGGAAAAGTTGGGACACCGGAA 1080
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1009 TTCTTAATAGCCTTTTCCTACGAACTGTCAAAGAAAGAAGGAAAAGTTGGGACACCGGAA 1068
Query 1081 AGACCCTTGTCGGATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTGTTCTATTA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AGACCCTTGTCGGATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTGTTCTATTA 1128
Query 1141 GAAATCTTGAAAAAACATAAGGGAAACATTTCTATCAAGGAGCTGAGCGACGTGACAGCA 1200
|| ||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1129 GATATCTTGAAAAAACATAAAGGAAACATATCTATCAAGGAGCTGAGTGACATGACAGCA 1188
Query 1201 ATCAAAGCGGAAGATATATTAAGCACACTTCAGAGCCTAGAACTGATACAGTACAGGAAA 1260
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1189 ATCAAGGCGGAAGATATACTAAGCACACTTCAGAGCCTAGAACTGATACAGTATAGGAAA 1248
Query 1261 GGACAGCATGTGATCTGTGCGGATCCAAAGGTTCTGGACCGACATCTGAAAGCTGCAGGC 1320
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GGACAACACGTGATCTGTGCGGATCCAAAGGTTCTGGACCGACATCTGAAAGCTGCAGGC 1308
Query 1321 CGAGGTGGTCTTGATGTAGATGCTAGCAAACTGATTTGGACACCTTACAAGGACCAGAGT 1380
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1309 CGAGGTGGTCTTGATGTAGATGTTAGCAAACTGATTTGGACACCTTACAGGGACCAGAGT 1368
Query 1381 TAAGAGTAAG-TACACTCCTCTTGTGCCATTGGATTTGATTTGAGTGTGTAAGTAAAGCG 1439
| |||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 1369 TGAGAGTAAGGTACACTCTTCTTCTGCCATTGGATTTAATTTGAGTGTGTAAGTAAAACG 1428
Query 1440 GGCTGTCTTATTCTCCTGAAATGTAAGTGTACTTTACTTGTAAATGTTGAAATCGTACTT 1499
|||| |||||||||||| |||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 1429 GGCTTTCTTATTCTCCTAAAATGTTTGTGTAGTTTACTTGTAAATGTTGAA-TCGTACTT 1487
Query 1500 GGAATGGTGTTTGTTTACAACTCTTATAATGAGGAAATTTGAAGCAATTTCATAGGTCCA 1559
|||||| ||||| | |||||||||||||| |||| |||||||||| ||||| ||||||
Sbjct 1488 GGAATGATGTTTATCAACAACTCTTATAATTAGGA--TTTGAAGCAACTTCATTGGTCCA 1545
Query 1560 TCTTTCTTTTGCT 1572
|||||||||||||
Sbjct 1546 TCTTTCTTTTGCT 1558
> Ahg496673 jgi|Araly1|496673|fgenesh2_kg.8__2489__AT5G64610.1
Length=1531
Score = 1354 bits (733), Expect = 0.0
Identities = 1168/1377 (85%), Gaps = 33/1377 (2%)
Strand=Plus/Plus
Query 27 TCTCCGACCCGAC-CGAGAAATGGGATCGTCAGCGAATACAGAAAC--CAACGGCAACGC 83
||||||||||||| ||||||||||||||| ||||||||||| || | | | || |
Sbjct 1 TCTCCGACCCGACTAAAGAAATGGGATCGTCTGCGAATACAGAGACGGCGATGATAA-TC 59
Query 84 ACCGCCACCGTCGTCGAATCAA-AAGCCTCCGGCTACGAACGGCGTTGATG-G-GTC-TC 139
|| ||||| ||||||| ||| || ||||| || ||||||| |||| | |||
Sbjct 60 GCC-TCACCGGCGTCGAA-CAACCAGAATCCGGAAACCAACGGCGGAGATGCGAGTCAGA 117
Query 140 ATCCTCCTCCTCCTCCTTTAACTC-CTGATCAAGCTATTATAGAGTCGGATCCGTCGAAG 198
||| | ||||| || | |||| || ||| | | | | || |||||| ||||||||
Sbjct 118 ATCATACTCCTGCTGGGAT-ACTCGCT-CTCACG-AACTCT-GAATCGGATGCGTCGAAG 173
Query 199 AAGAGGAA-AATGGGGATGCTTCCTCTAGAAGTGGGTACTCGTGTGATGTGTCGGTGGAG 257
|||| ||| ||||||| ||||||| || || || |||||||| |||||||||| |||||
Sbjct 174 AAGA-GAAGAATGGGGGTGCTTCCGCTTGAGGTTGGTACTCGCGTGATGTGTCAATGGAG 232
Query 258 AGACGGGAAACACCATCCGGTGAAAGTAATTGAGCGCCGG-CGGATACATAACGGCGGTC 316
|||||| ||| ||||||||||||| || || ||||||||| | || |||| || || |
Sbjct 233 AGACGGAAAATACCATCCGGTGAAGGTTATCGAGCGCCGGAAGAAT-TATAATGGTGGCC 291
Query 317 AAAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATAGGAGGCTGGATGAATGGA 376
| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 292 ACAATGATTACGAGTACTACGTTCATTACACAGAGTTTAATAGAAGATTGGATGAATGGA 351
Query 377 CTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTGTAGATGAAAAAGTGGAAG 436
| |||| || || || |||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 352 TTAAGCTTGAACAGCTTGACCTTGATTCAGTAGAGTGTGCTTTAGATGAAAAAGTTGAAG 411
Query 437 ACAAGGTAACAAGCTTGAAGATGACACGTCACCAGAAGA-GGAAGATCGATGAGACACAT 495
||||||| || ||||||||||||||||| |||||||| | ||||||| |||||||| |||
Sbjct 412 ACAAGGTGACTAGCTTGAAGATGACACGACACCAGAA-ACGGAAGATTGATGAGACTCAT 470
Query 496 ATAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGAACATGAAGAGTTCACGAAA 555
||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 471 GTAGAGGGTCATGAAGAGCTGGATGCTGCGAGTTTGCGTGAACACGAGGAGTTCACGAAA 530
Query 556 GTGAAGAACATATCAACAATTGAGCTTGGAAAATATGAGATTGAGACTTGGTACTTCTCC 615
|||||||||||| | || ||||||||||| || |||||||||||||| |||||||||||
Sbjct 531 GTGAAGAACATAGCTACGATTGAGCTTGGGAAGTATGAGATTGAGACATGGTACTTCTCT 590
Query 616 CCTTTTCCGCCAGAATACAATGACTGTGTGAAGCTCtttttttGTGAGTTTTGCCTGAAC 675
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 591 CCTTTTCCTCCAGAATACAATGACTGCGTGAAGCTCTTTTTCTGTGAGTTTTGCCTCAGT 650
Query 676 TTCATGAAACGCAAAGAGCAGCTTCAAAGGCATATGAGGAAGTGTGACCTGAAGCACCCA 735
|| ||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 651 TTTATGAAGCGCAAAGAGCAGCTTCAAAGGCATATGAGGAAATGCGATTTGAAGCACCCC 710
Query 736 CCTGGTGATGAAATTTACCGAAG-TGGTACCTTGTCAATGTTTGAGGTAGATGGCAAAAA 794
||||| |||||||| || ||||| | ||| ||||||||||||||||| |||||||| ||
Sbjct 711 CCTGGGGATGAAATCTATCGAAGCTC-TACTTTGTCAATGTTTGAGGTGGATGGCAAGAA 769
Query 795 GAACAAGGTTTATGCACAGAATCTCTGCTACCTGGCAAAGTTATTTCTTGACCACAAAAC 854
||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 770 GAATAAGGTCTATGCACAGAACCTCTGTTATCTGGCAAAGTTATTTCTTGACCACAAGAC 829
Query 855 TCTTTACTACGATGTTGATTTGTTTCTATTCTACGTTCTTTGCGAATGTGATGACCGAGG 914
||||||||| || ||||||||||| || ||||| |||| || ||||||||||| || ||
Sbjct 830 TCTTTACTATGACGTTGATTTGTTCCTGTTCTATATTCTCTGTGAATGTGATGATCGTGG 889
Query 915 ATGCCACATGGTTGGGTACTTTTCAAAGGAGAAGCATTCGGAAGAAGCATACAACTTAGC 974
||||||||||||||| |||||||||||||| || || ||||||||||| |||||||| ||
Sbjct 890 ATGCCACATGGTTGGATACTTTTCAAAGGAAAAACACTCGGAAGAAGCTTACAACTTGGC 949
Query 975 TTGCATTCTAACCCTGCCTTCATATCAAAGAAAAGGCTATGG-AAAGTTCTTAATAGCCT 1033
|||||| || || || ||| |||||||||| ||||||||||| ||| ||| |||||||||
Sbjct 950 TTGCATCCTTACACTTCCTCCATATCAAAGGAAAGGCTATGGCAAA-TTCCTAATAGCCT 1008
Query 1034 TTTCCTATGAACTGTCAAAGAAAGAGGGAAAAGTTGGGACACCGGAAAGACC-CTTGTCG 1092
| ||||||||||| |||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1009 TCTCCTATGAACTCTCAAAGAAAGAGGGCAAAGTCGGGACACCGGAAAGGCCGCTC-TCT 1067
Query 1093 GATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTG-TTCTATTAGAAATCTTGAA 1151
|||||||| ||| | || ||||||||||| |||||||| | || ||||||| ||| ||||
Sbjct 1068 GATCTAGGTTTAGTGAGTTACAGAGGTTACTGGACTCG-GATTTTATTAGACATCCTGAA 1126
Query 1152 AAAACATAAGGGAAACATTTCTATCAAGGAGCTGAGCGACGTGACAGCAATCAAAGCGGA 1211
||| || ||||||||||| ||||||||||||||||||||| ||||||| || ||||| ||
Sbjct 1127 AAAGCACAAGGGAAACATATCTATCAAGGAGCTGAGCGACATGACAGCGATTAAAGCAGA 1186
Query 1212 AGATATATTAAGCACACTTCAGAGCCTAGAACTGATACAGTACAGGAAAGGACAGCATGT 1271
||||||||||||||| || |||||| | ||||||||||| |||||||||||||| || ||
Sbjct 1187 AGATATATTAAGCACCCTGCAGAGCTTGGAACTGATACAATACAGGAAAGGACAACACGT 1246
Query 1272 GATCTGTGCGGATCCAAAGGTTCTGGACCGACATCT-GAAAGCTGCAGGCCGAGGTGGTC 1330
|||||| |||||||| ||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct 1247 GATCTGCGCGGATCCTAAGGTACTGGACCGACA-CTTGAAAGCGGCAGGCCGAGGTGGTC 1305
Query 1331 TTGATGTAGATGCT-AGCAAACTGATTTGGACACCTTACAAGGACCAGAGTTAAGAG 1386
||||||| |||| | |||||| |||| ||||| |||||||| || ||||| ||||||
Sbjct 1306 TTGATGTGGATG-TGAGCAAAATGATATGGACTCCTTACAAAGAGCAGAGCTAAGAG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5