BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09850.1
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892891 jgi|Araly1|892891|Al_scaffold_0006_887 1543 0.0
> Ahg892891 jgi|Araly1|892891|Al_scaffold_0006_887
Length=1095
Score = 1543 bits (835), Expect = 0.0
Identities = 1017/1098 (93%), Gaps = 39/1098 (4%)
Strand=Plus/Plus
Query 669 ATGGATTTGGATGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 728
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTGGACGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 60
Query 729 ATCGATACGGCGATTCTTGTTGCGTCTCTTGACTATGGTCAAGAACTGAAACGTCGGAGA 788
||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 61 ATCGATACGGCGATTCTCGTTGCGTCTCTTGACTATGGTCAAGAGCTCAAGCGTCGGAGA 120
Query 789 GATAACATCGTCGAGCGTCTCTACGCTACGTCGATGGCTAACAAGTGTAGAAACTGCGAT 848
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GATAACATCGTCGAGCGTCTCTACGCTACGTCCATGGCTAACAAGTGTAGAAACTGCGAT 180
Query 849 TTTGGCGGCGGTGGTAACGTTACGGAGGCGGCGATTGGTAGGGTTAATAATGGGAGGGTT 908
||||||||||| |||| |||||||||||||||| ||||||||| | |||||||||||||
Sbjct 181 TTTGGCGGCGGAGGTAGCGTTACGGAGGCGGCGGTTGGTAGGG-T--TAATGGGAGGGTT 237
Query 909 CACGAGGAGACGGAGGAGGAAGATGAAGAAG--G-AGTAACAGCAGCAGCAGAAGAAGAA 965
||||||||||||||||||||||||||||||| | || | |||||||||||| |||||||
Sbjct 238 CACGAGGAGACGGAGGAGGAAGATGAAGAAGCTGCAGGAGCAGCAGCAGCAGCAGAAGAA 297
Query 966 GTTAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 1025
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTAAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 357
Query 1026 TTTGATGATGAGCAGAAGAGTATTGTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 1085
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 TTTGATGATGAGCAGAAGAGTATTCTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 417
Query 1086 TCTGAAGAATCTTTGGTTGAGTTGCTTCAGAATCTGGAAGATATGGATATAACATTCCAA 1145
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 TCTGAAGAATCTTTAGTTGAGTTGCTTCAGAATCTGGAAGATATGGACATAACATTCCAA 477
Query 1146 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATCGAGTTCGGAAGCATCCTTCGAAC 1205
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 478 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATAGAGTTCGGAAGCATCCATCTAAC 537
Query 1206 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTAGATGAATGG 1265
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 538 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTTGACGAATGG 597
Query 1266 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCAAGTTTGATAG--C---CGAT---- 1316
||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 598 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCGAGTTTGATAGAACAATCAATCTCT 657
Query 1317 ------G-AG--GAT-----T-CACCGGTGCAGAAAGCTCTTCATAATGGTAGTCGCCAA 1361
| || ||| | ||||||||||||||||||| ||||| |||| |||||||
Sbjct 658 TCCAATGTAGCCGATGAGGATTCACCGGTGCAGAAAGCTCTCCATAACGGTAATCGCCAA 717
Query 1362 CAGGTCCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 1421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGGTGCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 777
Query 1422 AACAGTAACATTACTGAGCCAGAAAGAAAACCAAGACCTGTT---GCT-C--CTCA---A 1472
|||||| ||||| | |||||||| |||||||||||||||||| ||| | ||| |
Sbjct 778 AACAGTTACATTTCCGAGCCAGAGAGAAAACCAAGACCTGTTACTGCTGCTGCTCCTCCA 837
Query 1473 CCTAGGAGAGAATCTCCTTCTCCAGCAAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 1532
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 838 CCTAGGAGAGAATCTCCTTCTCCGGCTAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 897
Query 1533 ATTCCGAGGGACAAAGAGCATAAAGAAGTTGATTTCGACACGGCCAGGAAAAGGCTACAA 1592
|||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 898 ATTCCGAGGGACAAGGAGCATAAGGAAGTTGATTTCGACACAGCCCGGAAAAGGCTACAA 957
Query 1593 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAGGTGATGGACATT 1652
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAAGTGATGGACATT 1017
Query 1653 CATGACATTCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGGAGTTCTCAA 1712
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 CATGAGATCCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGTAGTTCTCAA 1077
Query 1713 GGTGGTAGACACTGGTAA 1730
||||||||||||||||||
Sbjct 1078 GGTGGTAGACACTGGTAA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5