BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09880.1
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892895 jgi|Araly1|892895|Al_scaffold_0006_891 2296 0.0
> Ahg892895 jgi|Araly1|892895|Al_scaffold_0006_891
Length=1563
Score = 2296 bits (1243), Expect = 0.0
Identities = 1477/1587 (93%), Gaps = 27/1587 (2%)
Strand=Plus/Plus
Query 86 ATGGAGTTTGACGAATACGAGTACCTGGAGAAGACGGTTGAGGAAGGAGCTGGGTCGAAT 145
||||| |||||||| ||||||||||| ||||||||||| |||||||||| |||||| |||
Sbjct 1 ATGGATTTTGACGAGTACGAGTACCTTGAGAAGACGGTGGAGGAAGGAGATGGGTCAAAT 60
Query 146 aagaaaaaggaagagagtgggaacgagaggagcgagaggagttacagaaagagagaagga 205
||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AAGAACAAGGAATCGAGTGGGAACGAGAAGAGCGAGAGGAGTTACAGAAAGAGAGAAGGA 120
Query 206 ggagagaggcagggggaagaaggaggtgaagaagagCG-GGTTAGCAGTCGGAGTAAGAA 264
||||||||||| | ||||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct 121 GGAGAGAGGCATGAGGAAGAAGGCGGTGACGAAGAGCGAGG-TAGCAGTCGGAGTAAGAA 179
Query 265 GTCTCGCGGAGACGGCGAAGAGAACGGTGGTGGTAagagggatcgggagagagagaggca 324
||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct 180 GTCTCGCGGAGACGGTGAAGAGAAC------GGT-------A-----AGAGAGAGAGGCA 221
Query 325 taggagcagcagagacaaggatagggagagggataaggttagagaaggatcgagagataa 384
||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 222 TAGGAGCAGCAGAGATAAGGATCGAGAGAGGGATAAGGTTAGAGAAGGATCGAGAGATAA 281
Query 385 agagagcgatcgagagaggagtagcaaggagagagataggagcgatagagacaaaccccg 444
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 282 AGAGAGCGATCGGGAGAGGAGTAGCAAGGAGAGAGATAGGAGCGATAGGGACAAACCCCG 341
Query 445 agacagagagagaagagagagggagaagaggagcagcagtagatctcggagggaagagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 342 AGACAGAGAGAGAAGAGAGAGGGAGAGGAGGAGCAGCAGTAGATCTCGGAGGGAGGAGAG 401
Query 505 ggaaCCCGAAGTAGTGGAAAGAGGAAGCAGAAGACACAGGGACAAGAAAGATGAGCCTGA 564
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 402 GGAACGTGAAGTAGTGGAAAGAGGAAGCAGGAGACACAAGGACAAGAAAGATGAGCCTGA 461
Query 565 AGCAGATCCAGAGAGAGATCAAAGAACTGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 624
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 462 AGCAGATCCAGAGAGAGATCAAAGAACCGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 521
Query 625 GGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGATGTGCGATTGAT 684
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 522 CGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGACGTGCGATTGAT 581
Query 685 CATGGACAGAAATTCAAGACGATCAAAAGGCGTCGGGTATATTGAGTTTTATGACGTGAT 744
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 582 CATGGACAGAAATTCAAGACGATCAAAGGGAGTCGGGTATATTGAGTTTTATGATGTGAT 641
Query 745 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACTGTTTCTTGGACAACCTGTGATGGT 804
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 642 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACCGTTTCTTGGACAACCTGTGATGGT 701
Query 805 TAAGCCCTCTGAAGCTGAAAAGAATCTGGCCCAATCTAACAGCACTACGGTTGGTGGTAC 864
||||||||||||||||||||||||| |||| |||||| | | |||||| ||||||||
Sbjct 702 TAAGCCCTCTGAAGCTGAAAAGAATTTGGCTCAATCT-A-A-CACTACACCAGGTGGTAC 758
Query 865 AGGCCCTGCAGATAGGAAACTCTATGTGGGTAACCTGCATTTCAACATGTCGGAACTGCA 924
||||||| |||||||||||| |||||||| || |||||||||||||| | ||| | ||
Sbjct 759 TGGCCCTGTAGATAGGAAACTTTATGTGGGAAATTTGCATTTCAACATGACAGAATTACA 818
Query 925 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 878
Query 985 TGAAACTGGGCAGTGCAAAGGATTTGGATTTATTCAGTTTGTTCAACTTGAACATTCAAA 1044
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 879 TGAGACTGGGCAGTGCAAAGGTTTTGGATTTATTCAGTTTGCTCAACTTGAACATTCAAA 938
Query 1045 GGCAGCACAAATTGCCTTAAATGGAAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 1104
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 939 GGCAGCACAAATTTCCTTAAATGGGAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 998
Query 1105 TTCCGTCTCTGATCATATTGGTACACAAGATTCTGCTCCAAAATCTGCTGATTTTGATGA 1164
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 999 CTCTGTCTCTGATCATATTGGTACACAAGATGCTGCTCCAAAATCTGCTGATTTTGATGA 1058
Query 1165 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTATGCTTATGCAGAAGCT 1224
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1059 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTCTGCTTATGCAGAAGCT 1118
Query 1225 GGATCGTTCAGGTATCGCTACAAGCATTGTGGGCTCTCTTGGAGTACCAGGGCTAAATGG 1284
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1119 GGATCGTTCAGGTATCGCGACGAGCATTGTGGGGTCTCTTGGAGTACCAGGGCTAAATGG 1178
Query 1285 AGCAGCGTTTAATCAACCAGGCATGAATCCTAGTTTCCCAACATCAGTGCTTCCGACAAC 1344
|||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1179 AGCAACCTTTAATCAACCAGGCATAAATCCTAGTTTCCCAACACCAGTGCTTCCGACAAC 1238
Query 1345 AGCAATCCCTTCTTTTGTCAATGAACATGTTGGTCTGCCAAGCGAATGCCTTCTATTGAA 1404
||||||||||||||| |||||||||| |||||||| |||||| ||||||||| |||||||
Sbjct 1239 AGCAATCCCTTCTTTGGTCAATGAACCTGTTGGTCAGCCAAGTGAATGCCTTTTATTGAA 1298
Query 1405 GAATATGTTTGATCCTGCAACCGAGACGGAAC-CAAACTTTGATCTT-GAAATCAGAGAC 1462
|| |||||||||||||||||||||||||||| | | |||||| ||| |||||||||||
Sbjct 1299 AAACATGTTTGATCCTGCAACCGAGACGGAACGCGA-CTTTGA-CTTTGAAATCAGAGAA 1356
Query 1463 GACGTTGCGGATGAATGTTCAAAGTATGGCCCAGTCAACCATATATACGTAGACAAGAAC 1522
||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1357 GACGTTGAGGATGAATGTTCAAAGTATGGCGAAGTCAATCATATATACGTAGACAAGAAC 1416
Query 1523 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCAGCAGCAGCAGCTCAAAGA 1582
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1417 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCGGCAGTAGCAGCTCAAAGA 1476
Query 1583 GCAATGCATATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1642
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GCAATGCACATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1536
Query 1643 GAATATGAAGCCAAAGCCAAGGCCTGA 1669
||||||| |||||||||||||||||||
Sbjct 1537 GAATATGCAGCCAAAGCCAAGGCCTGA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70352682515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5