BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10140.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value Ahg940484 jgi|Araly1|940484|scaffold_601028.1 1020 0.0 > Ahg940484 jgi|Araly1|940484|scaffold_601028.1 Length=631 Score = 1020 bits (552), Expect = 0.0 Identities = 606/632 (96%), Gaps = 4/632 (1%) Strand=Plus/Plus Query 92 CCCTCTCGGAG--AGAAGCCATGGGAAGaaaaaaaCTAGAAATCAAGCGAATTGAGAACA 149 ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 CCCTCTCGGAGACAGAAGCCATGGGGAGAAAAAAACTAGAAATCAAGCGAATTGAGAACA 60 Query 150 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 120 Query 210 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGC 269 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 121 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCTGCTTCCGGCAAGC 180 Query 270 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGC 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAAC 240 Query 330 ATGCTGATGATCTTAAAGCCTTGGATCAT-CAGTCAAAAGCTCTGAACTATGGTTCACAC 388 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 241 ATGCTGATGATCTTAAAGCCTTGGAT-ATTCAGTCAAAAGCTCTGAACTATGGTTCACAC 299 Query 389 TATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGT 448 |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 300 CATGAGCTACTTGAACTTGTGGAAAGCAAGCTTGTGGGATCAAATGTCAATAATGTGAGT 359 Query 449 ATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCC 508 ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 360 GTCGATACTCTTGTTCAACTGGAGGAACACTTTGAGACTGCCCTCTCCGTAACTAGAGCC 419 Query 509 AAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTG 568 |||||||| ||||| |||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 420 AAGAAGACAGAACTAATGTTGAAGCTTGTTGAGAACCTCAAAGAAAAGGAGAAATTGCTG 479 Query 569 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAA 628 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 480 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAAGAATCATCATGTGGGAGCAGAA 539 Query 629 GCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCA 688 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 540 GCTGAGATGGAGATTTCACCTGCAGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCG 599 Query 689 CTACTTAATTAGCCACCTTAAATCGGCGGTTG 720 || |||||||||||||||| |||||||||||| Sbjct 600 CTGCTTAATTAGCCACCTTTAATCGGCGGTTG 631 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34386871134 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5