BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10250.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892936 jgi|Araly1|892936|Al_scaffold_0006_932 1129 0.0
> Ahg892936 jgi|Araly1|892936|Al_scaffold_0006_932
Length=1755
Score = 1129 bits (611), Expect = 0.0
Identities = 713/762 (94%), Gaps = 8/762 (1%)
Strand=Plus/Plus
Query 43 GATGCTGGTCCAGTATGTAACAAAAGCATTATATTTCCAAGTAGAGTTGTTACATTAGCT 102
||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 49 GATGCTGATCCAATATGTAACAAAAGCATTATATTTCCAAATAGAGTTGTTGCATTAGCT 108
Query 103 AACAGCTTCGAGAAGAAAGACCGTTCCTGGTATGTCAAATCTCAAATCCCTACTGATCTG 162
||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 109 AACAGATTCGAGAAGAAAGA-----CC--GTATGTCAAATCTCAAATCCCTACTGATCTG 161
Query 163 TCTATTCAAGTCAACGATATTACC-TTCAAAGCACACAAGTTTCCTTTGATCTCCAAATG 221
|||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 162 TCTATTCAAGTCGACGACATTACCTTTAAAAGCACACAAGTTTCCTTTGATCTCCAAATG 221
Query 222 TGGTTACATAAGCTCTATTGAGCTAAAACCTTCAACTTCTGAGAATGGATATCATCTCAA 281
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TGGTTACATGAGCTCTATTGAGCTAAAACCTTCAACTTCTGAGAATGGATATCATCTCAA 281
Query 282 GCTGGAAAACTTCCCAGGTGGAGCAGATACATTCGAGACCATTCTGAAATTTTGCTACAA 341
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 282 GCTGGAAAACTTCCCAGGTGGAGCAGATACATTTGAGACCGTTCTGAAATTTTGCTACAA 341
Query 342 TCTCCCACTGGACTTGAATCCTCTCAATGTAGCTCCACTGAGGTGTGCATCAGAATACTT 401
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 342 TCTCCCACTGGACTTGAGTCCTCTCAATGTAGCTCCACTAAGATGTGCATCAGAATACTT 401
Query 402 GTACATGACTGAAGAGTTTGAAGCCGGGAATTTAATCTCCAAGACAGAAGCTTTCATCAC 461
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 GTACATGACTGAAGAATTTGAAGCCGGGAATTTAATATCCAAGACAGAAGCTTTCATCAC 461
Query 462 TTTTGTAGTACTTGCCTCATGGAGAGATACACTCACTGTTCTGAGATCCTGCACAAACTT 521
||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 462 TTTTGTAGTACTTTCCTCATGGAGAGATACATTCACTGTTCTGAGATCCTGTGCAAACTT 521
Query 522 ATCTCCGTGGGCCGAAAACCTCCAAATCGTAAGGAGATGCTGTGACTTGCTTGCTTGGAA 581
|||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 522 ATCTCCATGGGTCGAAAACCTGCAAATCGTAAGGAGATGTTGTGACTTGCTTGCTTGGAA 581
Query 582 AGCCTGCAATGATAACAACATACCAGAAGATGTTGTAGATAGAAATGAAAGATGCTTATA 641
|||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||
Sbjct 582 AGCCTGCAATGATAACAACAAACCAGAAGATGTTGTAGATAGCAATGACAGATGTTTATA 641
Query 642 CAATGACATAGCCACCCTTGACATTGATCACTTCATGAGGGTTATAACAACTATGAAAGC 701
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAGTGACGTAGCCACCCTTGGCATTGATCACTTCATGAGGGTTATAACAACTATGAAAGC 701
Query 702 AAGACGTGCCAAGCCACAGATTACAGGTAAAATCATCATGAAGTATGCAGATAACTTTTT 761
||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 702 AAGACGTGCCAAGCCGGAGATTACAGGTAAGATCATCATGAAATATGCAGAGAACTTTTT 761
Query 762 GCCGGTAATCAATGATGATTTGGAAGGTATAAAAGGTTACGG 803
|||| ||||| |||| ||||||||||| |||| |||||||||
Sbjct 762 GCCGATAATCGATGACGATTTGGAAGGAATAAGAGGTTACGG 803
Score = 998 bits (540), Expect = 0.0
Identities = 604/634 (95%), Gaps = 7/634 (1%)
Strand=Plus/Plus
Query 839 GAGGAAGAATGGAGGAAAGCAACAGTTTAGGATGTCAAGAACATAAAGAAACTATTGAAA 898
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 803 GAGAAAGAATGGAGGAAAGCAGCAGTTTAGGATGTCAAGAACATAAAGAAACTATTGAAA 862
Query 899 GTTTAGTCAGTGTACTTCCTCCACAATCGGGAGCAGTCTCATGTCACTTTCTCTTAAGGA 958
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 863 GCTTAGTCAGTGTACTTCCTCCACAATCTGGAGCAGTCTCATGCCACTTTCTCTTAAGGA 922
Query 959 TGCTGAAAACATCAATTGTTTACTCTGCATCACCAGCTTTAATATCTGATCTTGAGAAAC 1018
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 TGCTGAAAACAGCAATTGTTTACTCTGCATCTCCAGCTTTAATATCTGATCTTGAGAAAC 982
Query 1019 GGGTCGGCATGGCTTTGGAAGATGCTAATGTATGTGACCTCCTAATTCCTAACTTCAAAA 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 983 GGGTCGGCATGGCTTTGGAAGATGCTAATGTATGTGACCTCCTGATTCCTAACTTCAAAA 1042
Query 1079 ATGAAGAACAGCAAGAAAG-AGTCA-GGATTTTTGAGTTTTTCTTGATGCATGAGCAACA 1136
||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||||||
Sbjct 1043 ATGAAGATCAGCA-GAAAGGAG-CAAGGATTTTCGAGTATTTCTTGATGCATGAGCAACA 1100
Query 1137 ACAAGTTCTAGGAAAGCCAAGCATATCCAAGCTCTTGGACAATTATTTAGCCGAGATTGC 1196
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1101 ACAAGTACTAGGAAAGCCAAGCATAACCAAGCTCTTGGACAATTATTTAGCCGAGATTGC 1160
Query 1197 AAAAGATCCATATCTTCCCATCACAAAGTTTCAGGTTCTAGCAGAAATGTTGCCGGAAAA 1256
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAAAGATCCATGTCTACCCATCACAAAGTTTCAGGTTCTAGCAGAAATGTTGCCGGAAAA 1220
Query 1257 TGCTTGGAAATGTCATGATGGTCTCTATAGAGCAATTGATATGTTTCTCAAG--A-CTCA 1313
|||||||||||| ||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct 1221 TGCTTGGAAATGCCATGACGGTCTCTATAGAGCAATTGATATGTTCCTCAAGGTAACTCA 1280
Query 1314 TCCTTCATTGTCAGATCACGATAGAAGAAGATTATGCAAAACAATGAACTGTGAGAAACT 1373
||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1281 TCCTTCACTATCAGAGCACGATAGAAGAAGATTATGCAAGACAATGAACTGTGAGAAACT 1340
Query 1374 ATCACTTGATGCATGCCTACACGCTGCACAAAATGATCGGTTGCCTCTAAGAACTATCGT 1433
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1341 ATCACTTGATGCATGCCTACACGCTGCACAAAATGATCGGTTGCCTCTGAGAACTATCGT 1400
Query 1434 CCAGATCAATACTCAAGTGCTTTTCTCGGAACAA 1467
||||||||||||||||||||||||||||||||||
Sbjct 1401 CCAGATCAATACTCAAGTGCTTTTCTCGGAACAA 1434
Score = 442 bits (239), Expect = 4e-123
Identities = 296/323 (92%), Gaps = 5/323 (2%)
Strand=Plus/Plus
Query 1505 AGAAGGAGGAAGAAAATTCTGGAGGTCGTGAGGATAAACGAATGTCTAGAGATAATGAAA 1564
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1435 AGAAGAAGGAAGAAAATTCTGAAGGTCGTGAGGATAAACAAATGTCTAGAGATAATGAAA 1494
Query 1565 TC-A-TCAAGACACTTAAGGAAGAGTTAGAAAATGTGAAGAAGAAGATGTCAGAGCTTCA 1622
|| | || | |||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 1495 TCAAGACATG-CACTTAAGGAAGAGCTGGAAAATGTGAAGAAGAAGATGGCAGAGCTTCA 1553
Query 1623 GAGCGATTACAATGAGCTTCAACAAGAGTATGAAAGGCTAAGTAGCAAACAGAAGAGCTC 1682
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1554 GAACGATTACAATGAGCTTCAACAAGAGTATGAAAAGCTAAGTAGCAAACAGAAGAGCTC 1613
Query 1683 ACATAACTGGGGATTGCGTTGGCAAAAGGTGAAGAAATCGTTCCAGACAAAACGAGAAGA 1742
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1614 ACATAACTGGGGTTTGCGTTGGCAAAAGGTGAAGAAATCGTTCCAGATAAAACGCGAAGA 1673
Query 1743 TGAGGAAACAAGAGA-GAGGACACGAAGAAGAAGTTCCACGGGACAAAGAACTAGTTTCA 1801
|| ||||||||||| | || || ||||||||||||||||||||| |||||| || |||
Sbjct 1674 AGACGAAACAAGAGACGGGG-CAAGAAGAAGAAGTTCCACGGGACCAAGAACCAGCCTCA 1732
Query 1802 GGAGGAGAATGTCAATGTCATAA 1824
|||| ||||||||||||||||||
Sbjct 1733 GGAGAAGAATGTCAATGTCATAA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5