BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10350.1 Length=955 Score E Sequences producing significant alignments: (Bits) Value Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 1040 0.0 > Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 Length=966 Score = 1040 bits (563), Expect = 0.0 Identities = 595/611 (97%), Gaps = 0/611 (0%) Strand=Plus/Plus Query 59 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGTGGAGAAATCCCTGAAGTCGGCGATACG 118 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 1 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAATCCCTGAAGTCGACGAGACG 60 Query 119 GATGTTCCCGATCCGGATATCGATATGTCTGCAGCCGATGAGGACGCCGTTACGGAGCTT 178 |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| Sbjct 61 GATGTTCCCGATCCGGATATCGATATGTCTGCCGGCGATGATGACGCCGTTACGGAGCTT 120 Query 179 GCTGAGATGAAGAGGAGATTAAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGAGAGATG 238 ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 121 GCTGAGATGAAGAAGAGATTGAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGCGAGATG 180 Query 239 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 240 Query 299 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGACTATGCC 358 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGATTATGCC 300 Query 359 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGGGTAACC 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGTGTAACC 360 Query 419 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTG 478 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTC 420 Query 479 GAAGCCGTGCAAGAAGCTCTGCAGCTGAATGAATCAGAGCTTCATGGTCGTCAACTGAAG 538 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 421 GAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGGTCGTCAACTGAAG 480 Query 539 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 540 Query 599 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCGTATTTTTATTCCCCATAT 658 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 541 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCTTATTTTTATTCCCCATAT 600 Query 659 GGATACGGGAA 669 ||||||||||| Sbjct 601 GGATACGGGAA 611 Score = 267 bits (144), Expect = 1e-70 Identities = 257/305 (84%), Gaps = 34/305 (11%) Strand=Plus/Plus Query 666 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 735 Query 726 G---GAATAAGAAG-AACTATGACAGAGATGATGCC--GAG----G---TCGTCCCTCCA 772 ||||||||| ||||||||||||||||||||| ||| | |||||||| | Sbjct 736 ACTAGAATAAGAACCAACTATGACAGAGATGATGCCTAGAGAATAGAGGTCGTCCCTATA 795 Query 773 TTTCGAGCTTTATAT-ATGAATATGACTTTGC-TC-----GCACCTGAACTTAATTTTGA 825 |||| |||||||| | |||||||||| ||||| | ||||||||||||| |||||| Sbjct 796 TTTCCAGCTTTAT-TGATGAATATGATTTTGCCTTTTTATGCACCTGAACTTACTTTTGA 854 Query 826 ATCTGTCATGTACGGATGAGATTATAAGCTTTTGTTTCTTTAGATTATGATTATATTTGG 885 ||| |||||||||||||||||||||||||||||||||| ||| | | | || Sbjct 855 ATCGGTCATGTACGGATGAGATTATAAGCTTTTGTTTCCTTA--T---G-T-------GG 901 Query 886 TCGATATTACTTTCAGTTTATATCTTTGTTAGTACTTTCTTTCATCCAAAGGGGGCTAAA 945 ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| Sbjct 902 TCGATATTACTTTCAGTTTATATCTTTGTTATTGCTTTCTTTCATCCAAAGCTGGCTAAA 961 Query 946 TAAGT 950 ||||| Sbjct 962 TAAGT 966 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35454312810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5