BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10410.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487870 jgi|Araly1|487870|fgenesh2_kg.6__1004__AT5G10410.1 1179 0.0
> Ahg487870 jgi|Araly1|487870|fgenesh2_kg.6__1004__AT5G10410.1
Length=1180
Score = 1179 bits (638), Expect = 0.0
Identities = 799/878 (91%), Gaps = 6/878 (1%)
Strand=Plus/Plus
Query 22 TAGTTCCATCGAGATAATGCCAGGACTCAAAACTCACATAATCGGAAAATTCAAAGACAA 81
|||||| ||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 TAGTTCTATCGAGAGAATGTCAGAACTCAAAACTCGCATAATCGGAAAATTCAAAGACAA 60
Query 82 AGCTTCGATAGGCAAAGCAAGATTGGTTCATAGTTTCGGGTCCACCGCCGTCAAATACAT 141
||||||||||||||||||||| |||||||||||||| | ||||| || |||||||||||
Sbjct 61 AGCTTCGATAGGCAAAGCAAGGTTGGTTCATAGTTTTAGCTCCACTGCTGTCAAATACAT 120
Query 142 TCACTTAGCCCTCTTGAAGTCAACAACTCGTACTCCTAACAAACCACCAAACAGTGACTA 201
||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||| ||
Sbjct 121 TCACTTAGCGCTCTTGAAATCAACAACTCATACTTCTAACAAACCACCAAACAGTGATTA 180
Query 202 TGTCTCCGCTGTTATCTCTTACTCCAACAGCCGTTACGCTCCGGCGGCTTTCT-CAGCGG 260
|||||||| ||| ||||||||||| |||||||||||||||||||| ||||| | | ||||
Sbjct 181 TGTCTCCGATGTCATCTCTTACTCGAACAGCCGTTACGCTCCGGCAGCTTT-TGCGGCGG 239
Query 261 CTCTGTGGAGGTTACGTGTCACGAAGAACGCTATTGTGGCCACCAAGTCTCTCATCGTCA 320
|||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 240 CTCTGTGGAGATTACGTGTCACGAAAAACGCTATCGTGGCCACCAAATCTCTCATCGTCA 299
Query 321 TCCACAAGCTTATCAAATCATCAAGAGACAAGTTTGAAGGACTAGGTCATGGTCGAAACA 380
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 300 TCCACAAGCTTATCAAATCATCAAGAGACAAGTTTGAAGGCCTAGATCGTGGTCGAAACA 359
Query 381 ATCTAAAGTTGAACGAGTTTTCAGACAAATCTTCTAATCTCACGCTAGAATTGTCTCAGT 440
||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| |
Sbjct 360 ATCTAAAGTTGAATGAGTTTTCAGACAAATCTTCTACTCTCGCACTAGAATTGTCTCAAT 419
Query 441 GGATTAGATGGTATGGACAATACTTGGATCGTCTCTCGTGGGTTCCGAAGGTATTAGGAT 500
|||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 420 GGATTAGATGGTATGGACTATATTTGGATCGTCTCTCATGGGTTCCGAAAGTATTAGGAT 479
Query 501 CTTTTCCAAATTTGTTGGTGAATCCAAAAGATAAAGTTGAAGAGAAAGATCGTGTTTCGT 560
||||||||||||| |||| ||| || ||||| ||||| |||| ||||||||||||||||
Sbjct 480 CTTTTCCAAATTTATTGGAGAACCCGAAAGAGAAAGTCAAAGAAAAAGATCGTGTTTCGT 539
Query 561 CTTACCAAACCGGGTATATTATAAGACAAACGGATTCTCTTGTGAGtttttttGAGCATA 620
||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 540 CTTACCAAACCGGGTGTATTATGAGACAAACGGATTTTCTTGTGAGTTTTTTTGAGCATA 599
Query 621 TATGTACCAGACCTGAGATTCCGCCTATGTTCCAAAACAAGATCGTGGACGAGATTAGAG 680
||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 600 TATGTACCAGACCGGAGATTCCACCTATGTACGAAAACAAGATCGTGGACGAGATTAGAG 659
Query 681 AGCTAGTGATTGAAGACTA-TTTCAAGATTGTGAGATTGGTTATGGTACGGCTTC-AGGT 738
|||| |||||| ||||||| ||| | | ||||||||||||||||||||||||||| || |
Sbjct 660 AGCTCGTGATTCAAGACTACTTT-ATGGTTGTGAGATTGGTTATGGTACGGCTTCGAG-T 717
Query 739 GTTGTTTGAACGATTGATTAAACCGGGTGTTAAACCTATTGGTGATCTCGGTCTGAACGA 798
|||| |||| |||||||||||||| |||||| | ||||||||||| |||| |||||||
Sbjct 718 GTTGAGTGAAAGATTGATTAAACCGAATGTTAAGCATATTGGTGATCCCGGTTTGAACGA 777
Query 799 TTTTAGTCTGCTTTTGGTGAGACTTGTAGAATGCAAGGAGAGCTTGAGTGGATTATTTTG 858
||| |||||| ||||||||||||||| ||||||||| ||||| ||||||||||| |||||
Sbjct 778 TTTGAGTCTGGTTTTGGTGAGACTTGAAGAATGCAAAGAGAGTTTGAGTGGATTTTTTTG 837
Query 859 GCGTTGCAGACGTCTAGCGGATGATTTTTGGTGTTTGG 896
|||||||||||||||||| || ||||||||||||||||
Sbjct 838 GCGTTGCAGACGTCTAGCCGAAGATTTTTGGTGTTTGG 875
Score = 132 bits (71), Expect = 8e-30
Identities = 107/123 (87%), Gaps = 7/123 (6%)
Strand=Plus/Plus
Query 930 ACAATAAGCAGATGATTGAATTGGCCGGTTTGGTTCAGACTACGGTTAAGGACGATGAGG 989
|||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 876 ACAATAAGCAAATGGTTAAATTGGCCGGTTTGGTTCAGACTACGGTTAAAGACGATGAGG 935
Query 990 AGATGATTG--A-ATTGGTTGGTTCGGT-T-CAACCCGAATGGGTAACATTCGACGATTC 1044
||||| ||| | ||||| ||||| || | | | |||||||||||||||||||||| ||
Sbjct 936 AGATGGTTGAAATATTGGCCGGTTC-GTCTCCGA-CCGAATGGGTAACATTCGACGACTC 993
Query 1045 TGA 1047
|||
Sbjct 994 TGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5