BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10420.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892951 jgi|Araly1|892951|Al_scaffold_0006_947 769 0.0
Ahg940511 jgi|Araly1|940511|scaffold_601055.1 597 7e-170
> Ahg892951 jgi|Araly1|892951|Al_scaffold_0006_947
Length=486
Score = 769 bits (416), Expect = 0.0
Identities = 462/484 (95%), Gaps = 4/484 (1%)
Strand=Plus/Plus
Query 989 GAGCTGGTAATGGCAAAGGGGCAAGATTTGCAACGATTGTTTCAATCACACTATCGTTAA 1048
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 5 GAGCTGGTAATGGCAAAGGAGCAAGATTTGCAACGATTGTGTCAATCACACTATCGTTAA 64
Query 1049 TGATTGGATTATTCTTCACAGTCATCATTGTAATTT-TTCACGACCAAATCGGCTCGATC 1107
|| ||||||||||||||||||| |||| || |||| | || ||||||||||| ||||||
Sbjct 65 TGGTTGGATTATTCTTCACAGTGTTCATAGT-ATTTCTCCATGACCAAATCGGTTCGATC 123
Query 1108 TTTTCGTCAAGTGAAGCTGTCCTAAACGCAGTCGATAATCTTTCTGTTCTCTTAGCCTTC 1167
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 124 TTTTCGTCAAGTGAAGCTGTCCTAAACTCAGTCGATAATCTTTCTGTTCTATTAGCCTTC 183
Query 1168 ACGGTTCTTCTCAATAGTGTGCAACCAGTTCTTTCCGGTGTTGCTGTTGGTTCGGGTTGG 1227
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ACAGTTCTTCTCAATAGTGTGCAACCAGTTCTTTCCGGTGTTGCTGTTGGTTCGGGTTGG 243
Query 1228 CAATCGTACGTGGCATATATTAATTTGGGATGTTACTACCTTATCGGGCTTCCGTTTGGG 1287
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 244 CAATCATACGTGGCATATATCAATTTGGGATGCTACTACCTTATCGGGCTTCCGTTTGGG 303
Query 1288 CTTACTATGGGCTG-GATTTTCAAATTTGGAGTCAAGGGAATATGGGCCGGTATGATATT 1346
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTTACTATGGGCTGCG-TTTTCAAATTTGGAGTCAAGGGAATATGGGCCGGTATGATATT 362
Query 1347 TGGAGGAACCGCAATTCAAACGTTGATATTGATTATCATCACTACAAGATGTGACTGGGA 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGGAGGAACCGCAATTCAAACGTTGATATTGATTATCATCACTACAAGATGTGACTGGGA 422
Query 1407 CAATGAGGCACATAAATCAAGTGTGCGCATTAAAAAATGGTTGGTCTCGGACGCAGGAAA 1466
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 423 CAATGAGGCACATAAAGCAAGTGTGCGCATTAAAAAATTGTTGGTCTCGGACGCAAGAAA 482
Query 1467 CTGA 1470
||||
Sbjct 483 CTGA 486
> Ahg940511 jgi|Araly1|940511|scaffold_601055.1
Length=748
Score = 597 bits (323), Expect = 7e-170
Identities = 366/387 (95%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 580 TCAGCTGGAGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTCTATGGTTAT 639
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 207 TCAGCTGGGGTGTCACTTGCGGTTCATATTCTCGTGTGTTGGTTCTTCGTGTATGGTTAT 266
Query 640 AAACTCGGAATCATAGGGACTATGGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 699
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 267 AAACTCGGAATCATAGGGACCATAGCTAGTGTGAACGTGCCATGGTGGTTGAACATCTTC 326
Query 700 ATCTTATTTTTGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCTCA 759
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 327 ATCTTGTTTATGTACAGCACACGTGGTGGTTGTACACTCACTTGGACCGGCTTCTCCACC 386
Query 760 GAAGCTTTCACCGGACTTTTAGAATTAACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 819
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 387 GAAGCTTTCACCGGACTTTTAGAATTCACAAAACTCTCTGCCTCTTCCGGAATCATGCTT 446
Query 820 TGCTTAGAGAATTGGTACTATAAAATACTAATGCT-GATGACCGGGAACCTAGTAAATGC 878
|| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 447 TGTTTAGAGAATTGGTACTATAAAATACTAAT-CTTGATGACCGGAAACCTAGTAAATGC 505
Query 879 GAAAATTGCTGTGGACTCCTTATCAATATGCATGTCGGTAAATGGTTGGGAGATGATGAT 938
|||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 506 GAAAGTTGCGGTGGACTCCTTATCTATATGCATGTCCGTAAATGGTTGGGAGATGATGAT 565
Query 939 TCCACTTGCCTTCTTCGCGGGAACCGG 965
|||||||| || || |||||||||||
Sbjct 566 CCCACTTGCTTTATTTGCGGGAACCGG 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5