BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10650.1 Length=1931 Score E Sequences producing significant alignments: (Bits) Value Ahg487900 jgi|Araly1|487900|fgenesh2_kg.6__1034__AT5G10650.2 2704 0.0 Ahg489350 jgi|Araly1|489350|fgenesh2_kg.6__2484__AT5G24870.1 488 6e-137 > Ahg487900 jgi|Araly1|487900|fgenesh2_kg.6__1034__AT5G10650.2 Length=1965 Score = 2704 bits (1464), Expect = 0.0 Identities = 1742/1874 (93%), Gaps = 28/1874 (1%) Strand=Plus/Plus Query 69 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCTGGTAAACGATCTGTTGACCGGTTGG 128 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 99 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCGGGTAAACGATCTGTTGACCGGTTGG 158 Query 129 TTGTGCCTCGGAAAGCCAGTGGTCTTACCCTGCGTGAGAATATGAACAAGACAGATGGTA 188 |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||| Sbjct 159 TTGTGCCTCGGAAAGCTACTGGTCTTATCCTGCGTGACAATATGAACAAGACAGATGGTA 218 Query 189 AGAATGTTCCTTTCTGCAGCCGAGTTGGTTGTACTGCAAAGGTAACTTCTACCAAGAGAT 248 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 219 AGACTGTTCCTTTCTGCAGCCGAGTTGGTTGTAGTGCAAAGGTAACTTCTACCAAGAGAT 278 Query 249 CTCGGATTGGCTCTACGGATAACAATACAAAAGTTGGTCTGCCTCCGGTTCCATCTACCT 308 | ||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||| ||| Sbjct 279 CCCGGATTGGCTCTACGGACAACAATTCAAAAGTTGCTCTGCCTCCGGTTCCCTCTTCCT 338 Query 309 TAAATAGAAAGGAAATTGTTGGGAGCTCATCTCGTACTCCTGGTGGATTTGGATACTTGA 368 | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 339 CACATGGAAAGGAAATTGTTGGGAGTTCATCTCGAACTCCTGGTGGATTTGGATACTTAA 398 Query 369 GAAAGCCAGCCAAAGTTACTGCAAGAAGACAGCCGTCATCTAGTTTAGACACTGAATCTT 428 ||||| |||||||||||||| | |||||| |||||||||||||||||||||| ||||||| Sbjct 399 GAAAGACAGCCAAAGTTACTCCCAGAAGAAAGCCGTCATCTAGTTTAGACACAGAATCTT 458 Query 429 CGGAAACGAGTTGTATTCATGATGATCCAGCTGCAACAGAGCCCACACTTCCACGCCAAA 488 |||||| || | |||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 459 CGGAAAAGACTAGTATTCATTATGATCCAGCTGCAACAGAGCCTACACTTCCACGCCAAA 518 Query 489 AGACTAAAAGAGTCACAATCAATGTTCATCCTCAAAGCGCTGTCTCTAGAGAAGTTGTAA 548 |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| || Sbjct 519 AGACTAAAAGAGGCACAATCAATGTTCATCCTCAAAGCGCTTTCTCTGGAGAAGTCGTGT 578 Query 549 TAACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAATTAGTCATCCA-AAGTCTGAA 607 | ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| Sbjct 579 TGACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAAGTAGTCAT-CAGAAGTCTGAA 637 Query 608 TTGGGTACCCGCGATGCTCTGACGGGTCCTTCTGTTTCTACATCTTCTGGTAACAGTGAG 667 ||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 638 TTGGGCACCCGAGATACTCTGACGGGTCCTTCTGTTTCTACATCTTCTGATAACAGCGAG 697 Query 668 CACACTGTAAGAGGCGGTTTGAGTAGGCATAGATTGAGGAACTTGAGCTGCAATTCTGTG 727 ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct 698 CACACTGTAAGAGGCGGTTTGAGCAGGAATAGATTGAGGAACTTGAGGTGCAATTCTGTG 757 Query 728 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAA- 786 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAAG 817 Query 787 AAA--CGCTGATGGAGAGAGCAGCTTATCTAGCAAAGGTAGTAAGACTAGTGTGTTGGTT 844 ||| | |||||||||||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 818 AAAAACTCTGATGGAGAGAGCAGCTCCTCTAGCAAAGGCAGTAAGACTTGTGTGTTGGTA 877 Query 845 CCAAAGGTAAGGAATCAAATTTCTTCTCATGGCAATGGCGTCACAGTTTCTGATAACAGA 904 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 878 CCAAAGGTAAGGAGTCAAATTTCTTCTCATGGCAATGGCATCACAGTTTCTGATAACAGA 937 Query 905 AGAAATCGAGTAGTACCAAGTATTAGGGACAGCAGTACTGTTGTTTCAAATGGTTGTAGG 964 ||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||||| Sbjct 938 AGAAATCGAATAGTACCAAGTATTAGGGACAGCAGT---GTTGGTTCAGGTGGTGGTAGG 994 Query 965 AGAGCTGGTTATTTTGGTAGATCAGAGCGACTTGGAGCTACTGCATCCTCTGCTACTTCT 1024 ||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 995 AGATCTGGTTATATTGGTAGATCAGAGCAACTTGGAGCTGTTGCATCCTCTGCTACTTCT 1054 Query 1025 CGACAAATGCCTCATCCTACAACACCAACCGATCCCAATCCTTCTCTTTCGTTTTGTCCA 1084 |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |||| Sbjct 1055 CGACAAATGCCTCACCCTGCAACACCAACTGATCCCAATCCTTCTCTTTCGTTTTTTCCA 1114 Query 1085 TCAAATA--TA---TA--C-A----GTAGTACTGGACGCGTACATAGCAATATGCCTGGT 1132 ||| ||| || || | | ||||||||||||| |||||||||| ||||||||| Sbjct 1115 TCAGATAGATACAGTAGGCCAAACAGTAGTACTGGACGTGTACATAGCACGATGCCTGGT 1174 Query 1133 AGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1192 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1175 AGCCCCACGGAAGCTGACCCTTCAAACTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1234 Query 1193 AACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1252 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1235 AACATGAATGGTATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1294 Query 1253 CTTACATATGAGCAACTGGCTTCTATAGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1312 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1295 CTTACATATGAGCAACTGGCTTCTTTGGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1354 Query 1313 TTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATATGAGGAGTTA 1372 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1355 TTCTACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCATATGAGGAACTA 1414 Query 1373 CTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCA 1432 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1415 CTAGCTTTGGGGGAGAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCG 1474 Query 1433 AGAAGCCTTAAGCAAAGCATTTATCAGGAGACAGATGAAACCGGTTCCATCTCTCTGTA- 1491 |||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| | Sbjct 1475 AGAAGCCTCAAGCAAAGCACTTATCAGAAGACAGATGAAACCGGTTCCATTTCTCTG-AG 1533 Query 1492 TAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAATT 1551 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1534 TAAGGAAGATGATGTCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGT 1593 Query 1552 AGGGACTATTCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGCTGCGGAT 1611 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1594 AGGGACTATGCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGTTGCGGAT 1653 Query 1612 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAAGAGAAGTCGATTT-AGTGAA 1670 ||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||| Sbjct 1654 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAGGAGAAATC-ATTTTAGTGAA 1712 Query 1671 TAATGCCAACAGCAGTTTTAGCTTTGTGGGATGATTCCAAGATGATGCAGATACATTGCT 1730 ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1713 TAATGCCAACACCAGTTTTAGGTTTGTGGGATGACTCCAAGATGATGCAGATACATTGCT 1772 Query 1731 ATTT-TCTTCACCAAGTGCTTGTCTCTACATCATCTTGCTCTCTCT-TCTCTTTTCTTTT 1788 ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1773 -TTTGTCTTCACAAAGTGCTTGTCTCTACATCATCTTGCTCTCTCTCTCTCTTTTCTTTT 1831 Query 1789 GTACATATAACAGTATCTTTCTTTTGACCTAATTGGGTACAAATGGGTAAATAAGATCAG 1848 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1832 GTACATATAACAATATCTTTCTTTTGACCCAATTGGGTACAAATGGGTAAATAAGATCAG 1891 Query 1849 GTGACCATTTTCTTCTCCTTCTGTATTAAAAGCTCGACTTT-GATTTGAACCTGAAACAT 1907 |||||||| | |||||| ||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1892 GTGACCATATCCTTCTCTTTCTGTATTAAAAGCTCAACTTTTGATTTAAACCTGAAACAT 1951 Query 1908 GTTTTGGTTTATAC 1921 ||||||||||||| Sbjct 1952 TTTTTGGTTTATAC 1965 > Ahg489350 jgi|Araly1|489350|fgenesh2_kg.6__2484__AT5G24870.1 Length=2055 Score = 488 bits (264), Expect = 6e-137 Identities = 444/531 (84%), Gaps = 12/531 (2%) Strand=Plus/Plus Query 1124 ATGCCTGGTAGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTG 1183 ||||||||||||||| | ||||| | || ||| |||||||| ||||||| |||||||| Sbjct 1283 ATGCCTGGTAGCCCCTCAGAAGCCGGCCTTTCTCGCTCTTTGATGAACCGTGATGGTTTC 1342 Query 1184 AGTCACTACAACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACAT 1243 || | || |||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 1343 AGACGGTATAACATGAATGGAGTTGCAGAGGTATTGTTGGCACTGGAAAGGATTGAACAA 1402 Query 1244 GATGAAGAGCTTACATATGAGCAACTGGCT-TCTATAGAGACCAATCTATTCTCAAGTGG 1302 || | |||||||||||| |||||| ||||| | | ||||||||||||| |||| || ||| Sbjct 1403 GACGCAGAGCTTACATACGAGCAATTGGCTGT-TTTAGAGACCAATCTGTTCTTAAATGG 1461 Query 1303 TATGTTCAGATTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATA 1362 |||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1462 TATGAGCAGCTTCCACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCGTA 1521 Query 1363 TGAGGAGTTACTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGA 1422 |||||| ||| |||| ||| || |||||||||||||||||||| |||||||||||||| Sbjct 1522 TGAGGAATTATTAGCACTGGAAGAGAAAATGGGTACAGTGAGCACTGCTCTAAGCGAAGA 1581 Query 1423 AGCAC-TCTCAAGAAGCCTTAAG-CAAAGCATTTATCAGGAGACA-GATGAAACCGGTTC 1479 ||| | ||| || |||||| ||| | ||| ||||| | | | | |||||| |||| Sbjct 1582 AGCGCTTCTGAA-AAGCCTGAAGTC-AAGTATTTA-CCGTCCAAATGATGAATCCGGCGA 1638 Query 1480 CATCT-CTCTGTATAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTG 1538 ||| | | ||| | || ||||||||| | |||||||| |||||||||||||||||||||| Sbjct 1639 CATGTGC-CTGAACAAAGATGATGATGTAAAGTGCAGCATTTGCCAGGAAGAGTATGTTG 1697 Query 1539 ATGGAGATGAATTAGGGACTATT-CCATGTCAACATATGTACCATGTGAGCTGTGTACAA 1597 ||||||||||| |||| ||| || || || ||||||| ||||| |||||||| | ||| Sbjct 1698 ATGGAGATGAAGTAGGAACT-TTGCCTTGCCAACATAAATACCACGTGAGCTGCGCGCAA 1756 Query 1598 CAATGGCTGCGGATGAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAA 1648 |||||||| ||||||||||||||||| || || |||||||||||||| ||| Sbjct 1757 CAATGGCTTCGGATGAAGAATTGGTGTCCTATTTGCAAAACCTCTGCAGAA 1807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72561916725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5