BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10730.1 Length=1303 Score E Sequences producing significant alignments: (Bits) Value Ahg940544 jgi|Araly1|940544|scaffold_601088.1 1561 0.0 Ahg894745 jgi|Araly1|894745|Al_scaffold_0006_2741 318 5e-86 Ahg947792 jgi|Araly1|947792|scaffold_704021.1 316 2e-85 > Ahg940544 jgi|Araly1|940544|scaffold_601088.1 Length=904 Score = 1561 bits (845), Expect = 0.0 Identities = 884/903 (98%), Gaps = 2/903 (0%) Strand=Plus/Plus Query 212 TCTTCTTCTCCGATTCGAAAATGAGGACAATCGTTTCGCGTTTGATTCGTTATC-AATCG 270 ||| || ||||||||||||||||||||||||||| ||||||||||||||||| | ||||| Sbjct 1 TCTCCTGCTCCGATTCGAAAATGAGGACAATCGTCTCGCGTTTGATTCGTTA-CAAATCG 59 Query 271 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TCTCTTTCCCAGATACGGTTTGTTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGAC 119 Query 331 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCTAACAAAATTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCA 179 Query 391 CCTCCTACTGAGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 450 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 CCTCCTACTGAGAAGCTGCTTGTTTTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGT 239 Query 451 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGTCAGGTAGGTCGTCT 510 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 240 AAAGAAGCTTTAGATCGCGGCTTATCTGTCTCTAGCCTTTGCAGGTCAGGTAAGTCGTCT 299 Query 511 TTACAAGAGTCCTGGGCCTCCAGAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 570 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 TTACAAGAGTCCTGGGCTTCCAAAGTAACATGGCATCAAGGAAACCTTCTATCATCTGAT 359 Query 571 TTATTGAAAGATGCTCTTGAGGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 630 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTATTAAAAGATGCTCTTGATGGAGTGACTTCTGTGATTTCTTGTGTTGGTGGTTTTGGT 419 Query 631 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TCAAACTCATATATGTATAAGATTAACGGGACTGCAAACATCAACGCAATTAGGGCTGCC 479 Query 691 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAC 750 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCAGAAAAAGGTGTTAAAAGATTTGTCTATATTTCTGCTGCGGATTTCGGATTAGCCAAT 539 Query 751 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TACTTGTTGAGAGGATACTATGAGGGAAAGCGAGCTGCTGAGACCGAGCTGCTCACAAGA 599 Query 811 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTTGCATATGGAGGTATAATCTTGCGACCTGGTTTTATATATGGAACTCGCAGTGTTGGG 659 Query 871 AGCATGAAGATCCCGTTAGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 930 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGCATGAAGATCCCATTGGGAGTATTTGGTTCACCCATGGAGATGGTTCTTCAACAAGCA 719 Query 931 AAACCTCTGAACCAGCTTCCATTAGTCGGACCTTTGTTCACACCTCCGGTGAATGTTGAA 990 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 720 AAACCTCTGAACCAGCTTCCGTTAGTCGGACCTTTATTCACACCTCCGGTGAATGTTGAA 779 Query 991 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACAGATCCAGTGTTCCCTCCCGGGATTGTG 1050 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 780 TCGGTTGCAAAAGTCGCAGTTAGAGCAGCCACTGATCCAGTGTTCCCTCCCGGGATTGTG 839 Query 1051 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GATGTCCATGGAATACAACGTTACAGCCAACAGAAATCGAGATAAGTCCGTTTTGAAAAG 899 Query 1111 CTT 1113 ||| Sbjct 900 CTT 902 > Ahg894745 jgi|Araly1|894745|Al_scaffold_0006_2741 Length=276 Score = 318 bits (172), Expect = 5e-86 Identities = 202/216 (94%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 284 TAC-GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCT-AACAAAA 340 ||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 59 TACAGGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTTAACAAAA 118 Query 341 TTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTG 400 |||||||||| |||||||||||||||| |||| ||||||||||||||||| |||| |||| Sbjct 119 TTGATGAGCCATTCAATGTGGAAGAAGTTGAGTCTGTACATGTGCCTCCAACTCCAACTG 178 Query 401 AGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTT 460 ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| Sbjct 179 AGAAGCTGCTTGTCCTGGGTGGAAATGGTTTTGTGGGATCACACATATGTAAAGAAGCTT 238 Query 461 TAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496 |||||||||||||||| ||||||||||||||||||| Sbjct 239 TAGATCGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 274 > Ahg947792 jgi|Araly1|947792|scaffold_704021.1 Length=336 Score = 316 bits (171), Expect = 2e-85 Identities = 198/211 (94%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 287 GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTAACAAAATTGAT 345 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 103 GGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTGTCGACAGACTCTAACAAAATTGAT 162 Query 346 GAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTGAGAAG 405 |||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||| Sbjct 163 GAGCCCTTCAATGTGGAAGAAGTTGATTCTGTACATGTGCCTCCAACTCCAACTGAGAAG 222 Query 406 CTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTTTAGAT 465 |||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||| Sbjct 223 CTGCTTGTCCGGGGTGGAAATGGTTTTGTGGGATCACATATATGTAAAGAAGCTTTAGAT 282 Query 466 CGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496 ||||||||||| ||||||||||||||||||| Sbjct 283 CGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 313 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48721087926 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5