BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10760.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940548 jgi|Araly1|940548|scaffold_601092.1 1018 0.0
Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835 483 2e-135
> Ahg940548 jgi|Araly1|940548|scaffold_601092.1
Length=922
Score = 1018 bits (551), Expect = 0.0
Identities = 763/864 (88%), Gaps = 20/864 (2%)
Strand=Plus/Plus
Query 29 AGAGGGA-GGTTAA-AATGAGCATAATGAGGAATTTCTTGAGTATGATAATTATGCTTTG 86
|||| || || ||| |||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 5 AGAGAGAGGGGTAACAATGAGCATAATGAGGAATTTCTTGAATATGATAATTCTTCTTTG 64
Query 87 CGTATGTCTCAATTGGTGTTTTGCTGAAGGAGCTGAGAAAAGCGATAGTGGAAAGGTACT 146
||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 65 TGTATGTCTCAATTGGTGTTTTACTGAAGGAGCTGAGAAAAGAGAGAGTGGAAAGGTACT 124
Query 147 TGATTCTTACACCATTCAAGTCAGCTCTCTGTTCCCTTCATCATCATCTTGTGTCCCTTC 206
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 125 TGACTCTTACACCATTCAAGTCAGCTCTCTTTTTCCTTCATCATCATCTTGTGTCCCTTC 184
Query 207 TTCAAAAGCATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 266
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 185 TTCAAAAGTATCTAATACCAAGTCATCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTC 244
Query 267 GCATC-T--TAGCAGC---GATGCGAGAGTCGACCATGACGAAATCATCAGACGCGATCA 320
|||| | ||||| | ||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 245 CCATCTTAGTAGCAACAAAGATGCGAGACTCGACCATGACGAAATCCTCAGACGTGATCA 304
Query 321 AGCACGTGTGGAGTCCATCTACTCAAAATTGTCAAAGAATAGCGCAAATGAAGTCAGCGA 380
|||||| |||||||| ||| |||| ||| |||||||||||| ||| ||||||||||| |
Sbjct 305 AGCACGCGTGGAGTCTATCCACTCGAAACTGTCAAAGAATATTGCAGATGAAGTCAGCAA 364
Query 381 AGCCAAGTCAACGGAGCTACCGGCTAAAAGTGGAATCACACTCGGATCAGGAAACTACAT 440
||||||||||||||||||||| || |||| |||||||| |||||| ||| |||||||||
Sbjct 365 AGCCAAGTCAACGGAGCTACCAGCCAAAAATGGAATCATACTCGGTTCACCAAACTACAT 424
Query 441 CGTAACAATCGGAATCGGGACACCGAAGCACGATCTATCGCTGGTCTTCGACACCGGAAG 500
||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 425 CGTAACAATCGGAATTGGGACACCGAAGCACGATATATCGCTAATCTTCGACACCGGAAG 484
Query 501 TGACCTGACATGGACTCAATGTGAGCCATGTCTAGGAAGTTGCTATTCACAAAAGGAACC 560
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 485 CGATTTGACATGGACTCAATGCGAGCCATGTCTTGGAAGTTGCTATTCACAAAAGGAACC 544
Query 561 AAAATTTAACCCTTCTTCGTCTTCTACTTACCAAAACGTCTCGTGCTCATCTCCAATGTG 620
|||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 545 AAAATTTAACCCTTCTTCATCTTCTTCTTACCACAACGTCTCATGCTCATCTCCAATGTG 604
Query 621 TG-AAGACGCTG-AGAGTTGTTCGGCTTCCAACTGCGTATACAGTATC-GTTTACGGCGA 677
|| || || | | | ||||| ||||||||||| ||| ||||| | ||| ||| | || ||
Sbjct 605 TGGAA-ACACCGCA-AGTTGCTCGGCTTCCAATTGCCTATACGGAATCCGTT-ATGGAGA 661
Query 678 TA-AGTCGTTTACCCAAGGATTTCTTGCAAAGGAGAAATTTACCCTAACGAACTCTGATG 736
| | || ||||| ||||| || || ||||||||||| ||| |||||||||||||||
Sbjct 662 TGGA-TCAATTACCGTCGGATTCCTAGCCAAGGAGAAATTCACCTTAACGAACTCTGATG 720
Query 737 TTTTGGAGGATGTTTACTTTGGTTGCGGTGAAAACAACCA-AGGACTTTTCGACGGTGTT 795
| ||||| |||||||||||||||||||||||||| ||| | |||||||||| |||||| |
Sbjct 721 TCTTGGACGATGTTTACTTTGGTTGCGGTGAAAATAAC-AGAGGACTTTTCAACGGTGCT 779
Query 796 GCTGGGC-TTCTCGGCCTTGGCCCTGGCAAACTCTCACTACCGGCGCAAACAACAACGAC 854
||||| | ||||||||||||| ||||||||| ||||| | ||| | |||||||| |||||
Sbjct 780 GCTGG-CATTCTCGGCCTTGGTCCTGGCAAATTCTCATTTCCGTCACAAACAACGACGAC 838
Query 855 CTACAACAATATCTTCTCCTACTG 878
|||||||||||||||||||||||
Sbjct 839 TTACAACAATATCTTCTCCTACTG 862
> Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835
Length=1428
Score = 483 bits (261), Expect = 2e-135
Identities = 1095/1477 (74%), Gaps = 140/1477 (9%)
Strand=Plus/Plus
Query 43 ATGAGCAT-AATGAGGAATTTCTTGAGTATGATAATTATGCTTTGCGTATGTCTCAA-TT 100
|||||||| ||| |||||||| |||| ||| ||| || | ||||| ||||||||||| ||
Sbjct 1 ATGAGCATAAAT-AGGAATTTGTTGAATATCATAGTTGTCCTTTGTGTATGTCTCAATTT 59
Query 101 GGTGTT-TTGCTGAAGGAGCT-GAGAAAAGCGATAGTGGAAAGGTACTTGATTCTTACAC 158
|| ||| | | || |||||| || ||| | || | | | | ||||||| | ||
Sbjct 60 GG-GTTGTAAC-GAGGGAGCTCAAG-AAA--G--AG-AG-ATTG-A--TGATTCTCATAC 107
Query 159 CATTCAAGTCAGCTCTCTGTT--C-CCTTCATCATCATCTTGTGTCCCTTCTTCAAAAGC 215
|| |||||||||||||| || | || ||||||||||||||||| | |||| | | |||
Sbjct 108 AATCCAAGTCAGCTCTCTCTTCCCACCATCATCATCATCTTGTGTTCTTTCTCCCAGAGC 167
Query 216 ATCTAATACCAAGTCGTCGCTGCGCGTGGTGCACATGCATGGTGCGTGCTCGCATCTTAG 275
|||| ||| ||||| || |||| |||| ||| | ||| || ||||||||| ||| |
Sbjct 168 GTCTACTACAAAGTCCTCACTGCACGTGACGCATAGGCACGGCACGTGCTCGCGTCTAAA 227
Query 276 C-A--GCGATGCGA-GAGT-C-GACCATGACGAAATCATCAGACGCGATCAAGCACGTGT 329
| | || | || | |||| | ||||||| ||| ||| | |||| ||| || || || ||
Sbjct 228 CAATGGCAAAGCCACGAGTCCAGACCATGTCGAGATCCTAAGACTCGACCAGGCTCGCGT 287
Query 330 GGAGTCCATCTACTCAAAATTGTCAAAG-AA-T-AGC-GCAAATGAAGTCAG-CGAAGCC 384
| |||||| |||||||| |||| ||| || | | | ||||| | ||||| | |||||
Sbjct 288 AAACTCCATCCACTCAAAACTGTCGAAGAAACTCA-CAACAAATCACGTCAGTCAAAGCC 346
Query 385 AAGTCAACGGAGCTACCGGCTAAAAG-TGGAATCACACTCGGATCAGGAAACTACATCGT 443
|||||||||| ||||||||| |||| |||| ||||||||| ||||| |||||||||||
Sbjct 347 -AGTCAACGGATCTACCGGCT-AAAGACGGAAGCACACTCGGTTCAGGTAACTACATCGT 404
Query 444 AACAATCGGAATCGGGACACCGAAGCACGATCTATCGCTGGTCTTCGACACCGGAAGTGA 503
|| ||||| |||||||||| ||| |||||||||| || |||||||||||||||| ||
Sbjct 405 GACGGTCGGACTCGGGACACCAAAGAACGATCTATCACTAATCTTCGACACCGGAAGCGA 464
Query 504 CCTGACATGGACTCAATGTGAGCCATGTCTAGGAAGTTGCTATTCA-CAAAAGGAACCAA 562
| || |||||||||||| |||||||| | ||| |||||| | | |||||||||||||
Sbjct 465 TTTAACGTGGACTCAATGTCAGCCATGTGTTCGAACTTGCTA-TGACCAAAAGGAACCAA 523
Query 563 AATTTAACCCTTCTTCGTCTTCTACTTACCAAAACGTCTCGTGCTCATC-TCCA--ATGT 619
|||||||||||| |||| || ||||| | |||||||| || ||||| | || |||
Sbjct 524 TCTTTAACCCTTCTAAGTCTACTTCTTACTACAACGTCTCCTGTTCATCAT-CAGCGTGT 582
Query 620 -G----------T--G--A-A-G--ACG-CTGAGAGTTGTTCGGCTTCCAACTGCGTATA 659
| | | | | | ||| | || |||||||||||||| || ||| | ||
Sbjct 583 GGTTCCCTCTCTTCAGCTACAGGAAACGCCGGA-AGTTGTTCGGCTTCGAATTGCATCTA 641
Query 660 CAGTA-TCGTTTACGGCGAT-AAGTCGTTTAC-CCA-AGGATTTCTTGCAAAGGAGAAAT 715
| ||| || ||||||||| || || || | ||| || ||||| || ||||| ||||
Sbjct 642 CGGTATTC-AATACGGCGATCAA-TC-ATT-CTCCATCGGGTTTCTCGCCAAGGATAAAT 697
Query 716 TTACCCTAACGAACTCTGATGT-TTTGGA-GGATGTTTACTTT-GGTTGCGGTGAAAACA 772
|||| ||||||| ||| || || ||| || || |||||| ||| ||||| ||||| ||||
Sbjct 698 TTACACTAACGAGCTCCGACGTATTT-GACGG-TGTTTA-TTTCGGTTGTGGTGAGAACA 754
Query 773 ACCAAGGACTTTTCGA-CGGTGTTGCTGGGCTTCTCGGCCTTGGCCCTGGCAAACTCTCA 831
|||||||||||||| | |||||| || || |||||||| || |||| || ||| || |||
Sbjct 755 ACCAAGGACTTTTC-ACCGGTGTCGCCGGACTTCTCGGTCTCGGCCGTGACAAGCTTTCA 813
Query 832 CTACCGGCGCAAACAACAACGACCTACAACAATATCTTCTCCTACTGTCTACCTTCTTTC 891
| ||| |||| || | ||| | ||||| || |||||||| |||||||| ||||| | |
Sbjct 814 TTTCCGTCGCAGACGGCTACGGCTTACAATAAAATCTTCTCTTACTGTCTCCCTTCATCC 873
Query 892 ACAAGTAAC-AGTACTGGCCATCTTACCTTTGGATCCGCTGGAATCT-CTGAATCCGTTA 949
|||| | | ||| || ||||| ||||| |||||||| ||||||| | | |||||| |
Sbjct 874 GCAAG---CTA-TACCGGACATCTCACCTTCGGATCCGCCGGAATCTCCAG-ATCCGTCA 928
Query 950 AATTCACACCGATTTCTTCCTTC-C-CAAGCGCA-TTCAAT-TATGGCATCGATATCATA 1005
||||||| |||||||| || || | | | | | || | || ||| | ||||| |
Sbjct 929 AATTCACGCCGATTTCAACCATCACTGATG-GAACCTCGTTCTACGGCCTTAATATCGTT 987
Query 1006 GGTATCAGTGTAGGC-GACAAGGAATTAG-CGATTACTCCAAAC-TCATTCTCGA--CCG 1060
| |||| || ||| | ||| || | | ||||| || ||| | | ||||| | |||
Sbjct 988 GCAATCACCGTCGGCGGTCAA-AAACT-GCCGATTCCTTCAACCGT-GTTCTCAACTCCG 1044
Query 1061 AAGGTGCTATAATCGACTCAGGCACAGTGT-TTACTCGCCTCCCTACC-AAAGTC-TACG 1117
|| ||| ||||||| ||||| || || | | ||||| ||||| || |||| | ||||
Sbjct 1045 --GGAGCTTTAATCGATTCAGGAACCGT-TATCACTCGTCTCCC-GCCGAAAG-CTTACG 1099
Query 1118 CGGAACTCCGCAGTGT-TTTTAAGGAAAAGATGTC-GAGTTA-CAAGAGTACGTC-GG-G 1172
||| | || || | || |||| |||||||| || || | || ||||| || |
Sbjct 1100 CGGCGTTACGAAG-CTCGTTCAAGGCGAAGATGTCAAAG-TATC-CGACCACGTCAGGCG 1156
Query 1173 ATACGGGCTTTTTGACACATGTTACGATTTCA-CTGGCTTGGATACGGTGAC-ATACCCG 1230
| | | | || ||||| |||| |||| ||| | || || | |||||||| || ||||
Sbjct 1157 -T-CTCGATCTTGGACACGTGTTTCGATCTCAGC-GGATTTAAGACGGTGACGAT-CCCG 1212
Query 1231 -ACGATTGCATTCTCCTTC-GCCGGTAGCACTGTCGTAGAACTT-GATGGATCAGGGAT- 1286
| | | || ||||| ||| | |||| || | ||||| |||||| | | | ||| ||
Sbjct 1213 AAAG-TGGCGTTCTCTTTCAG-CGGTGGCGCCGTCGTGGAACTTGGCT-CAAAAGGAATA 1269
Query 1287 TTCGTTGC-CGATCAAGATATCACAGGTTTGTTTGGCGTTTGCAGGGAAT---GATGAC- 1341
|| || | || | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1270 TT--TTACGCGTTTAAGATATCACAGGTTTGTTTGGCGTTTGCAGGGAATAGCGATGACA 1327
Query 1342 CT-TC-CCGCCATCTTTGGAAACGTTCAGCAGACGA-CGCTAGATGTTGTGTACGACG-T 1397
| | | |||||||||||||||||||||||| | | ||||||| ||||||||||| | |
Sbjct 1328 GTAACGCTGCCATCTTTGGAAACGTTCAGCAG-CAAACGCTAGAAGTTGTGTACGATGGT 1386
Query 1398 GGCTGGTGGACGAGTCGGTTTTGCTCCCAATGGTTGT 1434
| | ||||| || ||||| |||||||| ||||| |||
Sbjct 1387 G-CGGGTGGGCGGGTCGGGTTTGCTCCAAATGGGTGT 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5